diff --git a/scripts/combine25.py b/scripts/combine25.py new file mode 100644 index 0000000..91c3482 --- /dev/null +++ b/scripts/combine25.py @@ -0,0 +1,83 @@ +import pandas as pd +import os +import numpy as np +import matplotlib.pyplot as plt + +curdir = os.getcwd() +path_delim = '/' +df1 = pd.read_excel(curdir + path_delim + "data/users_19_10_2023_19_57.xlsx", sheet_name="Sheet1") +df2 = pd.read_excel(curdir + path_delim + "data/19 Oct 2023 Final Results.xlsx") + +df2 = df2.sort_values('testTime') + +variance_column = df2["led2Buffer"].var(ddof=0) +print(variance_column) + +# df2.plot(kind = 'scatter', x = 'testTime', y = 'calculatedRatio') +# plt.show() + + +# df2.plot(kind = 'scatter', x = 'testTime', y = 'led1Buffer') +# plt.show() + +# df2.plot(kind = 'scatter', x = 'testTime', y = 'led2Buffer') +# plt.show() + +# df2.plot(kind = 'scatter', x = 'testTime', y = 'led1Sample') +# plt.show() + +# df2.plot(kind = 'scatter', x = 'testTime', y = 'led2Sample') +# plt.show() + +df = df1.merge(df2, on="_id", how="outer") +print(df.columns) +# # df = pd.concat([df1, df3], ignore_index=True) +df['Age'] = 2023 - df['birthYear_x'] + +df['deviceId'].hist() +plt.show() + +# df['led2Sample'].plot.box() +# plt.show() + +# df['led2Sample'].plot.kde() +# plt.show() + +# df['led2Sample'].plot.density() +# plt.show() + +# df['category'].plot.pie() +# plt.show() + +df = df[["_id", "name_x", "abhaId_x", "aadharId_x", "Age", "gender_x", "category_x", "maritalStatus_x", "house_x", "district_x", "state_x", "pinCode_x", "phoneNumber_x", "classificationResult", "bloodGroup_x", "createdAt_x", "caste_x", "registrationCenterName_x"]] +print(df) + +df.rename(columns={'_id': "Sample ID", "name_x": "Name", "abhaId_x": "ABHA ID", "aadharId_x": "Aadhaar ID", "gender_x": "Gender", "category_x": "Category", "maritalStatus_x": "Marital Status", "house_x": "Address", "district_x": "District", "state_x": "State", "pinCode_x": "Pincode", "phoneNumber_x": "Mobile Number", "createdAt_x": "Date", "classificationResult": "Test Result", "bloodGroup_x": "Blood Group", "Age": "Age", "caste_x": "Caste", "registrationCenterName_x": "Center"}, inplace = True) +df = df.reindex(["Sample ID", "Name", "ABHA ID", "Aadhaar ID", "Age", "Gender", "Caste", "Category", "Marital Status", "Address", "District", "State", "Pincode", "Mobile Number", "Date", "Test Result", "Blood Group", "Center"], axis=1) +# df['Date'] = pd.to_datetime(df["Date"].dt.strftime('%d-%m-%Y')) + +# df = df.sort_values(by=['Date'], ascending=True) + +df["Test Result"].fillna("NOTEST", inplace = True) +print("NOTEST: ", len(df[df["Test Result"] == "NOTEST"])) +df = df[df["Test Result"] != "NOTEST"] + +df_final = df.sort_values('Date').drop_duplicates('Sample ID', keep='last') + +df_final.loc[df_final['Test Result'] == 'Normal', 'Test Result'] = 'Normal (HbA)' +df_final.loc[df_final['Test Result'] == 'Sickle Cell Trait', 'Test Result'] = 'Sickle Cell Trait (HbAS)' +df_final.loc[df_final['Test Result'] == 'SCT', 'Test Result'] = 'Sickle Cell Trait (HbAS)' +df_final.loc[df_final['Test Result'] == 'SCD', 'Test Result'] = 'Sickle cell Disease (HbSS)' +df_final.loc[df_final['Test Result'] == 'PBL', 'Test Result'] = 'Positive Borderline' +df_final.loc[df_final['Test Result'] == 'NBL', 'Test Result'] = 'Negative Borderline' +df_final.loc[df_final['Gender'] == 'Male', 'Gender'] = 'MALE' +df_final.loc[df_final['Gender'] == 'Female', 'Gender'] = 'FEMALE' +print(df_final.groupby(["Test Result"]).describe()) + +df_count = df.groupby(["Test Result"]).describe()["ABHA ID"]["count"] +print(df.groupby(["Test Result"]).describe()["ABHA ID"]["count"]) + +writer = pd.ExcelWriter(curdir + path_delim + "data/Oct19.xlsx", engine = 'openpyxl') +df_final.to_excel(writer, sheet_name = 'op', index=False) +df_count.to_excel(writer, sheet_name = "count") +writer.close()