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26 oct data

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Pritimay Sarkar
2023-11-03 16:17:26 +05:30
parent ba4fedac12
commit 672c73a9b2
1 changed files with 41 additions and 0 deletions
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scripts/combine30.py Normal file
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import pandas as pd
import os
import numpy as np
import matplotlib.pyplot as plt
curdir = os.getcwd()
path_delim = '/'
df1 = pd.read_excel(curdir + path_delim + "data/users_26_10_2023_18_56.xlsx", sheet_name="Sheet1")
df2 = pd.read_excel(curdir + path_delim + "data/tests_26_10_2023_17_26 kit analysis 1.xlsx", sheet_name="data")
df2 = df2.sort_values('testTime')
df = df[["_id", "name_x", "abhaId", "aadharId", "Age", "gender", "category", "maritalStatus", "house", "district", "state", "pinCode", "phoneNumber", "classificationResult", "bloodGroup", "testTime", "caste", "registrationCenterName"]]
print(df)
df.rename(columns={'_id': "Sample ID", "name_x": "Name", "abhaId": "ABHA ID", "aadharId": "Aadhaar ID", "gender": "Gender", "category": "Category", "maritalStatus": "Marital Status", "house": "Address", "district": "District", "state": "State", "pinCode": "Pincode", "phoneNumber": "Mobile Number", "testTime": "Date", "classificationResult": "Test Result", "bloodGroup": "Blood Group", "Age": "Age", "caste": "Caste", "registrationCenterName": "Center"}, inplace = True)
df = df.reindex(["Sample ID", "Name", "ABHA ID", "Aadhaar ID", "Age", "Gender", "Caste", "Category", "Marital Status", "Address", "District", "State", "Pincode", "Mobile Number", "Date", "Test Result", "Blood Group", "Center"], axis=1)
df["Test Result"].fillna("NOTEST", inplace = True)
print("NOTEST: ", len(df[df["Test Result"] == "NOTEST"]))
df = df[df["Test Result"] != "NOTEST"]
df_final = df.sort_values('Date').drop_duplicates('Sample ID', keep='last')
df_final.loc[df_final['Test Result'] == 'Normal', 'Test Result'] = 'Normal (HbA)'
df_final.loc[df_final['Test Result'] == 'Sickle Cell Trait', 'Test Result'] = 'Sickle Cell Trait (HbAS)'
df_final.loc[df_final['Test Result'] == 'SCT', 'Test Result'] = 'Sickle Cell Trait (HbAS)'
df_final.loc[df_final['Test Result'] == 'SCD', 'Test Result'] = 'Sickle cell Disease (HbSS)'
df_final.loc[df_final['Test Result'] == 'PBL', 'Test Result'] = 'Positive Borderline'
df_final.loc[df_final['Test Result'] == 'NBL', 'Test Result'] = 'Negative Borderline'
df_final.loc[df_final['Gender'] == 'Male', 'Gender'] = 'MALE'
df_final.loc[df_final['Gender'] == 'Female', 'Gender'] = 'FEMALE'
print(df_final.groupby(["Test Result"]).describe())
df_count = df.groupby(["Test Result"]).describe()["ABHA ID"]["count"]
print(df.groupby(["Test Result"]).describe()["ABHA ID"]["count"])
writer = pd.ExcelWriter(curdir + path_delim + "data/Oct26.xlsx", engine = 'openpyxl')
df_final.to_excel(writer, sheet_name = 'op', index=False)
df_count.to_excel(writer, sheet_name = "count")
writer.close()