14 dec data

cloud-functions/nodejs/functions/index.js

@@ -137,7 +137,7 @@ exports.kitAlert = async (event, context) => {
     console.log('Function triggered by change to: ' + resource);
     // now log the full event object
     console.log(JSON.stringify(event));
-    const { kitSerial, classificationResult, _id, led1Average, led3Average } = event.value.fields;
+    const { kitSerial, classificationResult, _id, led1Average, led3Average, deviceRatio } = event.value.fields;
     console.log('kitSerial', kitSerial);
     console.log('classificationResult', classificationResult);
     // if (classificationResult?.stringValue?.includes("Trait")) {
@@ -204,17 +204,37 @@ exports.kitAlert = async (event, context) => {
         classification = "Sickle Cell Disease";
     }
 
+    // device ratio class
+    const devRatio = deviceRatio?.doubleValue;
+    let devRatioClass = "INVALID";
+    if (devRatio > 0 && devRatio <= 0.55) {
+        devRatioClass = "Normal";
+    }
+    if (devRatio > 0.55 && devRatio <= 0.575) {
+        devRatioClass = "Negative Borderline";
+    }
+    if (devRatio > 0.575 && devRatio <= 0.85) {
+        devRatioClass = "Sickle Cell Trait";
+    }
+    if (devRatio > 0.85 && devRatio <= 0.9) {
+        devRatioClass = "Positive Borderline";
+    }
+    if (devRatio > 0.9 && devRatio <= 1) {
+        devRatioClass = "Sickle Cell Disease";
+    }
+
     console.log(classification);
 
     const docs = await admin.firestore().collection("testData").where("_id", "==", _id.stringValue).get();
     docs?.forEach(async (doc) => {
-        // await admin.firestore().collection("testData").doc(doc.id).update({
+        await admin.firestore().collection("testData").doc(doc.id).update({
         // abs427: Abs427,
         // abs555: Abs555,
         // predictedDenovixRatio: pdr,
         // prdClassification: classification
-        // // incubationTime: admin.firestore.FieldValue.delete()
-        // });
+        // incubationTime: admin.firestore.FieldValue.delete()
+            deviceRatioClass: devRatioClass,
+        });
     })
 };
 

cloud-functions/python/functions/clearusers/main.py

@@ -0,0 +1,56 @@
+import functions_framework
+from google.cloud.firestore_v1.base_query import FieldFilter
+from firebase_admin import initialize_app, credentials, firestore
+import os
+from datetime import datetime
+
+initialize_app()
+
+@functions_framework.http
+def clearusers(request):
+    """HTTP Cloud Function.
+    Args:
+        request (flask.Request): The request object.
+        <https://flask.palletsprojects.com/en/1.1.x/api/#incoming-request-data>
+    Returns:
+        The response text, or any set of values that can be turned into a
+        Response object using `make_response`
+        <https://flask.palletsprojects.com/en/1.1.x/api/#flask.make_response>.
+    """
+    if request.method == 'OPTIONS':
+        headers = {
+            'Access-Control-Allow-Origin': '*',
+            'Access-Control-Allow-Methods': 'GET',
+            'Access-Control-Allow-Headers': 'Content-Type',
+            # 'Access-Control-Max-Age': '3600'
+        }
+
+        return ('', 204, headers)
+
+    headers = {
+        'Access-Control-Allow-Origin': '*'
+    }
+    
+    db = firestore.client()
+    source_collection = "patientData"
+
+    # Get all documents from the source collection
+    source_docs = db.collection(source_collection).where(filter=FieldFilter("createdAt", ">=", datetime.today().strftime("%Y-%m-%d"))).stream()
+    count = 0
+    for doc in source_docs:
+        # Extract the document ID
+        doc_id = doc.id
+        print(doc_id)
+
+        # Get the document data
+        doc_data = doc.to_dict()
+
+        try:
+            # Delete the document from the source collection
+            db.collection(source_collection).document(doc_id).delete()
+            print(f"Document with ID '{doc_id}' updated")
+            count = count + 1
+        except Exception as e:
+            print(f"Error deleting document with ID '{doc_id}' from the source collection: {e}")
+    
+    return ('cleared users: {}!'.format(count), 200, headers)

cloud-functions/python/functions/clearusers/requirements.txt

@@ -0,0 +1,6 @@
+functions-framework==3.*
+firebase_functions~=0.1.0
+pandas==2.0.3
+openpyxl==3.1.2
+firebase-admin==6.2.0
+scikit-learn==1.3.1