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This commit is contained in:
Pritimay Sarkar
2023-12-14 21:03:09 +05:30
parent 6bd972276f
commit 7bcdbff123
18 changed files with 237 additions and 16 deletions
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scripts/dataset04.py Normal file
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import pandas as pd
import os
curdir = os.getcwd()
path_delim = '/'
df = pd.read_csv(curdir + path_delim + 'data/bquxjob_6ab822ae_18c5f7cb3c7.csv')
df = df.dropna()
print(df)
print(df["finalResult"].unique())
df['testResult'] = df['finalResult']
df.loc[df['testResult'] == 'Normal', 'testResult'] = 'Normal'
df.loc[df['testResult'] == 'Normal (HbA)', 'testResult'] = 'Normal'
df.loc[df['testResult'] == 'Sickle Cell Trait', 'testResult'] = 'SCT'
df.loc[df['testResult'] == 'Sickle Cell Trait (HbAS)', 'testResult'] = 'SCT'
df.loc[df['testResult'] == 'Sickle cell Trait (HbAS)', 'testResult'] = 'SCT'
df.loc[df['testResult'] == 'Sickle Cell Disease', 'testResult'] = 'SCD'
df.loc[df['testResult'] == 'Sickle Cell Disease (HbAS)', 'testResult'] = 'SCD'
df.loc[df['testResult'] == 'Sickle cell Disease (HbSS)', 'testResult'] = 'SCD'
df.loc[df['testResult'] == 'Positive for Sickle Cell. HPLC for Confirmation', 'testResult'] = 'Inconclusive'
df.loc[df['testResult'] == 'Inconclusive. Very low Absorbance - Repeat test with Higher Blood Volume', 'testResult'] = 'Inconclusive'
df.loc[df['testResult'] == 'Negative Borderline. Repeat Test', 'testResult'] = 'Inconclusive'
df.loc[df['testResult'] == 'Inconclusive. Very low Absorbance - Repeat test with Higher Blood Volume', 'testResult'] = 'Inconclusive'
df.loc[df['testResult'] == 'Inconclusive. Repeat with test with lower volume of blood', 'testResult'] = 'Inconclusive'
df = df.drop_duplicates()
print(df.groupby(["testResult"]).describe())
# writer = pd.ExcelWriter(curdir + path_delim + "data/dataset4.xlsx", engine = 'openpyxl')
# df.to_excel(writer, sheet_name = 'op', index=False)
df.to_csv(curdir + path_delim + "data/dataset04.csv", index=False)
# df_count.to_excel(writer, sheet_name = "count")
# writer.close()