import os import firebase_admin from firebase_admin import credentials from firebase_admin import firestore from google.cloud.firestore_v1.base_query import FieldFilter import pandas as pd from datetime import datetime import sys import matplotlib.pyplot as plt cred = credentials.Certificate(os.getcwd() + '/' + 'keys/hpos-prod-firebase-adminsdk.json') firebase_admin.initialize_app(cred) db = firestore.client() patient_collection = db.collection("patientData") test_collection = db.collection("testData") start_date = sys.argv[1] end_date = sys.argv[2] query = test_collection.where(filter=FieldFilter("testTime", ">=", start_date)).where(filter=FieldFilter("testTime", "<", end_date)) docs = query.stream() data = [] for doc in docs: doc_data = doc.to_dict() data.append(doc_data) df = pd.DataFrame(data) print(df) print(df.size) column_names = ["_id", "name", "classificationResult", "prdClassification", "slopeRatioClass", "predictedDenovixRatio", "slopeRatio", "calculatedRatio", "deviceRatio", "kitSerial", "led1Gain1", "led1Gain2", "led1Gain4", "abs1", "led1Average", "led1Buffer", "led1Sample", "led2Gain1", "led2Gain2", "led2Gain4", "abs2", "led2Average", "led2Buffer", "led2Sample", "led3Gain1", "led3Gain2", "led3Gain4", "hb3", "abs3", "led3Average", "led3Buffer", "led3Sample", "led4Gain1", "led4Gain2", "led4Gain4", "hb4", "abs4", "led4Average", "led4Average", "led4Buffer", "led4Sample", "batteryLevel", "batteryVoltage", "deviceId", "deviceSerialNumber", "appVersion", "testTime"] common_columns = [col for col in column_names if col in df.columns] df = df[common_columns] print("duplicates", len(df['_id']) - len(df['_id'].drop_duplicates())) df = df.drop_duplicates() # df = df.groupby(["classificationResult"]).describe() df_count = df.groupby(["classificationResult"]).describe()["calculatedRatio"]["count"] print(df.groupby(["classificationResult"]).describe()["calculatedRatio"]["count"]) print(df.groupby(["deviceId"]).describe()["calculatedRatio"]["count"]) print(df.groupby(["deviceSerialNumber"]).describe()["calculatedRatio"]["count"]) # print(df.groupby(["kitSerial", "classificationResult"]).describe()) # df_device = df[df["deviceId"] == "HCV1003"] # df.plot(kind = 'scatter', x = 'testTime', y = 'led2Buffer') # plt.show() # df[df["deviceId"] == "HCV2013"]['led2Sample'].plot.box() # plt.show() print(df.groupby(["kitSerial"]).describe()["calculatedRatio"]["count"]) output_filename = f'tests_{datetime.today().strftime("%d_%m_%Y_%H_%M")}.xlsx' downloads_dir = os.path.join(os.path.expanduser("~"), "Downloads") output_path = os.path.join(downloads_dir, output_filename) writer = pd.ExcelWriter(output_path, engine = 'openpyxl') df.to_excel(writer, sheet_name = 'data', index=False) df_count.to_excel(writer, sheet_name = "hc_count") df.groupby(["result"]).describe()["resultRatio"]["count"].to_excel(writer, sheet_name = "tr_count") df.groupby(["deviceId"]).describe().to_excel(writer, sheet_name = "stats") df.groupby(["kitSerial"]).describe()["calculatedRatio"]["count"].to_excel(writer, sheet_name = "kit_count") df.groupby(["kitSerial", "classificationResult"]).describe()["calculatedRatio"]["count"].to_excel(writer, sheet_name = "kit_class") df.groupby(["deviceId", "classificationResult"]).describe()["calculatedRatio"]["count"].to_excel(writer, sheet_name = "device_class") writer.close() print(f"Data saved to '{output_path}'") firebase_admin.delete_app(firebase_admin.get_app())