import os import firebase_admin from firebase_admin import credentials from firebase_admin import firestore from google.cloud.firestore_v1.base_query import FieldFilter import pandas as pd import datetime import sys import platform from datetime import datetime if __name__ == "__main__": if platform.system() == 'Windows': path_delim = '\\' else: path_delim = '/' key_file_path = os.getcwd() + path_delim + "keys" + path_delim + "hpos-af3cc-firebase-adminsdk-n261k-2bfd463ec0.json" cred = credentials.Certificate(key_file_path) # Replace with your own service account key path firebase_admin.initialize_app(cred) # Get a reference to the Firestore database db = firestore.client() # Specify the collections patient_collection = db.collection("patientData") test_collection = db.collection("testData") start_date = sys.argv[1] # '2023-01-12' #input("Please enter the start date (yyyy-mm-dd): ") end_date = sys.argv[2] #'2023-07-16' #input("Please enter the end date (yyyy-mm-dd): ") query = test_collection.where(filter=FieldFilter("testTime", ">=", start_date)).where(filter=FieldFilter("testTime", "<", end_date)) patient_docs = query.stream() # Prepare data to store in CSV data = [] for patient_doc in patient_docs: # print(patient_doc) patient_data = patient_doc.to_dict() patient_id = patient_data["_id"] # Query the document from testData collection based on the common _id test_docs = test_collection.where("_id", "==", patient_id).stream() for test_doc in test_docs: # print(test_doc) test_data = test_doc.to_dict() # Combine the data from both collections into a single dictionary combined_data = {**patient_data, **test_data} # Fill empty fields in test_data with corresponding values from patient_data for key, value in combined_data.items(): if value == "" and key in patient_data: combined_data[key] = patient_data[key] data.append(combined_data) # Convert the data to a DataFrame df = pd.DataFrame(data) print(df) print(df.size) # Save the DataFrame to a CSV file output_filename = f'data_{datetime.today().strftime("%d_%m_%Y_%H_%M")}.xlsx' df.to_csv(output_filename, index=False) downloads_dir = os.path.join(os.path.expanduser("~"), "Downloads") output_path = os.path.join(downloads_dir, output_filename) writer = pd.ExcelWriter(output_path, engine = 'openpyxl') df = df[(df['testTime'] > start_date) & (df['testTime'] <= end_date)] df = df.sort_values(by=['testTime'], ascending=False) # df = df.drop(['resultData', "reportUploadTime", "userImageURL", "testType", "birthYear", "testStatus"], axis=1) df = df[["_id", "calculatedRatio", "deviceId", "deviceRatio", "deviceType", "kitSerial", "led1Average", "led1Buffer", "led1Sample", "led2Average", "led2Buffer", "led2Sample", "location", "deviceSerialNumber", "name", "testTime"]] df.rename(columns={'deviceSerialNumber': "login_id", "calculatedRatio": "calibrated_ratio", "led1Buffer": "427_buffer_intensity", "led2Buffer": "555_buffer_intensity", "led1Sample": "427_sample_intensity", "led2Sample": "555_sample_intensity", "led1Average": "427_absorbance", "led2Average": "555_absorbance"}, inplace = True) df = df.reindex(sorted(df.columns), axis=1) df.to_excel(writer, sheet_name = 'data', index=False) writer.close() print(f"Data saved to '{output_path}'") # Close the Firebase Admin SDK firebase_admin.delete_app(firebase_admin.get_app())