import functions_framework from firebase_functions import https_fn # import firebase_admin from firebase_admin import initialize_app, firestore import pandas as pd import numpy as np import datetime import sys import platform import os import io from flask import send_file from datetime import datetime import re import xlsxwriter import math import matplotlib.pyplot as plt initialize_app() @functions_framework.http def performance(request): """HTTP Cloud Function. Args: request (flask.Request): The request object. Returns: The response text, or any set of values that can be turned into a Response object using `make_response` . """ if request.method == 'OPTIONS': headers = { 'Access-Control-Allow-Origin': '*', 'Access-Control-Allow-Methods': 'GET', 'Access-Control-Allow-Headers': 'Content-Type', # 'Access-Control-Max-Age': '3600' } return ('', 204, headers) headers = { 'Access-Control-Allow-Origin': '*' } request_json = request.get_json(silent=True) request_args = request.args if request_json and 'start_date' in request_json and 'end_date' in request_json: start_date = request_json['start_date'] end_date = request_json['end_date'] elif request_args and 'start_date' in request_args and 'end_date' in request_args: start_date = request_args['start_date'] end_date = request_args['end_date'] else: start_date = "2023-12-04" end_date = "2023-12-05" path_delim = "/" db = firestore.client() test_collection = db.collection("testData") data = [] test_docs = test_collection.stream() for test_doc in test_docs: test_data = test_doc.to_dict() data.append(test_data) df = pd.DataFrame(data) df = df[(df['testTime'] > start_date) & (df['testTime'] <= end_date)] df = df.sort_values(by=['testTime'], ascending=False) # df = df.drop(['resultData', "reportUploadTime", "userImageURL", "testType", "birthYear", "testStatus", "reportPath", "createdBy", "csvPath", "result", "mobileId", "resultRatio", "localFlag", "led2", "led1"], axis=1) df = df[["_id", "classificationResult", "prdClassification", "predictedDenovixRatio", "calculatedRatio", "deviceRatio", "kitSerial", "abs1", "led1Average", "led1Buffer", "led1Sample", "abs2", "led2Average", "led2Buffer", "led2Sample", "abs3", "led3Average", "led3Buffer", "led3Sample", "abs4", "led4Average", "led4Buffer", "led4Sample", "deviceId", "deviceSerialNumber", "name", "testTime"]] df.rename(columns={'deviceSerialNumber': "loginId"}, inplace = True) # df = df.reindex(sorted(df.columns), axis=1) df = df.drop_duplicates() curdir = os.getcwd() path_delim = '/' precision_threshold = 0.009 accuracy_threshold = 0.02 denovix_reference_values = { "Tartrazine": { "30": 0.187191676, "50": 0.187447015, "60": 0.187191676, "75": 0.294739334, "90": 0.187191676, "100": 0.410113264, "120": 0.187191676, "125": 0.512526022, "150": 0.622883833, "175": 0.721095085, "180": 0.187191676, "200": 0.824065454, "210": 0.187191676, "225": 0.931385567, "250": 1.002224884, "275": 1.091996882, "300": 1.16558307, }, "KMnO4": { "145": 0.187191676, "250": 0.077846397, "290": 0.359288533, "350": 0.111884606, "435": 0.187191676, "450": 0.138031952, "550": 0.175111257, "580": 0.628039375, "650": 0.208337398, "720": 0.187191676, "750": 0.238773222, "850": 0.267574903, "950": 0.299568449, "1050": 0.329271864, "1150": 0.365827844, "1160": 0.388015579, "1250": 0.388015579, "1350": 0.417304075, "1450": 0.447634285, "1550": 0.478220085, }, } df_reference_device = pd.DataFrame(denovix_reference_values).T df_reference_device.index.name = 'Solution' df_reference_device.columns.name = 'Wavelength' texts_to_check = ['Tar', 'KM'] df['solution'] = df['name'].str.extract(f"({'|'.join(texts_to_check)})", flags=re.IGNORECASE) df['solution'] = df['solution'].replace({'Tar': 'Tartrazine', 'KM': 'KMnO4'}, regex=True) def extract_numbers(s): match = re.match(r'\d+', s) if match: return int(match.group()) else: return None df["concentration"] = df['name'].apply(extract_numbers) df['absorbance'] = df.apply(lambda row: row['led1Average'] if row['solution'] == 'Tartrazine' else row['led3Average'], axis=1) fig, ax = plt.subplots() unique_solutions = df['solution'].unique() for solution in unique_solutions: solution_data = df[df['solution'] == solution] concentration_means = solution_data.groupby('concentration')['absorbance'].mean() ax.plot(concentration_means.index, concentration_means.values, marker='o', linestyle='-', label=f'Mean Absorbance for {solution}') ax.set_title('Mean Absorbance for Each Solution') ax.set_xlabel('Concentration') ax.set_ylabel('Mean Absorbance') ax.legend() df_precision_acc = df[["deviceId", "solution", "concentration", "led1Average", "led3Average", "absorbance"]].groupby(["deviceId", "solution", "concentration"]).describe()["absorbance"][["count", "min", "max", "mean"]] df_precision_acc['precision'] = df_precision_acc['max'] - df_precision_acc['min'] df_precision_acc['precision_result'] = ['Fail' if diff > precision_threshold else 'Pass' for diff in df_precision_acc['precision']] df_precision_acc.reset_index(inplace=True) df_precision_acc.set_index(["deviceId", "solution", "concentration"], inplace=True) device_precision_results = {} for index, group_df in df_precision_acc.groupby(level=[0, 1, 2]): soln = index[1] concen = index[2] result_values = group_df['precision_result'].values if index[0] not in device_precision_results: device_precision_results[index[0]] = "Pass" else: result = 'Fail' if 'Fail' in result_values else 'Pass' if result == 'Fail': device_precision_results[index[0]] = 'Fail' df_device_precicion_results = pd.DataFrame(list(device_precision_results.items()), columns=['Device', 'Result']) df_precision_acc = df_precision_acc.assign(accuracy='', accuracy_result='') device_accuracy_results = {} for idx, row in df_precision_acc.iterrows(): device_id = row.name[0] solution = row.name[1] concentration = str(int(row.name[2])) reference_value = denovix_reference_values[solution][concentration] try: reference_value = denovix_reference_values[solution][concentration] accuracy = math.fabs(row['mean'] - reference_value) df_precision_acc.at[idx, 'accuracy'] = accuracy accuracy_result = 'Pass' if accuracy < accuracy_threshold else 'Fail' df_precision_acc.at[idx, 'accuracy_result'] = accuracy_result if device_id not in device_accuracy_results: device_accuracy_results[device_id] = accuracy_result else: if accuracy_result == 'Fail': device_accuracy_results[device_id] = 'Fail' except KeyError: df_precision_acc.at[idx, 'accuracy'] = np.nan df_precision_acc.at[idx, 'accuracy_result'] = 'Fail' # Assume 'Fail' for missing data df_device_accuracy_results = pd.DataFrame(list(device_accuracy_results.items()), columns=['Device', 'Result']) device_results = {} df_device_results = pd.merge(df_device_precicion_results, df_device_accuracy_results, on='Device', how='outer', suffixes=('_precision', '_accuracy')) df_device_results['Result'] = np.where((df_device_results['Result_precision'] == 'Fail') | (df_device_results['Result_accuracy'] == 'Fail'), 'Fail', 'Pass') output_filename = f'/tmp/accuracy_{datetime.today().strftime("%d_%m_%Y_%H_%M")}.xlsx' output_path = os.getcwd() + path_delim + output_filename print('output_path', output_path) writer = pd.ExcelWriter(output_filename, engine = 'xlsxwriter') df_device_results.to_excel(writer, sheet_name="device_results") # df_device_precicion_results.to_excel(writer, sheet_name="device_precision") # df_device_accuracy_results.to_excel(writer, sheet_name="device_accuracy") df_precision_acc.to_excel(writer, sheet_name="concentration") df.to_excel(writer, sheet_name="in") df_reference_device.to_excel(writer, sheet_name="reference_device") workbook = writer.book worksheet_device_results = writer.sheets['device_results'] red_format = workbook.add_format({'bg_color': '#FFC7CE', 'font_color': '#9C0006'}) green_format = workbook.add_format({'bg_color': '#C6EFCE', 'font_color': '#006100'}) worksheet_device_results.conditional_format('E2:E{}'.format(df_device_results.shape[0] + 1), {'type': 'text', 'criteria': 'containing', 'value': 'Fail', 'format': red_format}) worksheet_device_results.conditional_format('E2:E{}'.format(df_device_results.shape[0] + 1), {'type': 'text', 'criteria': 'containing', 'value': 'Pass', 'format': green_format}) wks1 = workbook.add_worksheet('abs_plot') wks1.write(0,0,'Abs Plot') imgdata=io.BytesIO() fig.savefig(imgdata, format='png') wks1.insert_image(2,2, '', {'image_data': imgdata}) ### debug each row # # Merge df and df_device_precicion_results on deviceId # df_merged = pd.merge(df, df_device_precicion_results, left_on='deviceId', right_on='Device', how='left') # # Drop the duplicate "Device" column # df_merged.drop(columns=['Device'], inplace=True) # # Save the merged DataFrame to the Excel file # df_merged.to_excel(writer, sheet_name="merged_results") writer.close() # firebase_admin.delete_app(firebase_admin.get_app()) with open(output_filename,'rb') as f: file_data = io.BytesIO(f.read()) # application/vnd.ms-excel return send_file(file_data, download_name= output_filename, mimetype="application/vnd.openxmlformats-officedocument.spreadsheetml.sheet")