Final Change

.gitlab-ci.yml

@@ -1,42 +1,71 @@
-before_script:
+# Read more about this script on this blog post https://about.gitlab.com/2018/10/24/setting-up-gitlab-ci-for-android-projects/, by Jason Lenny
-  - export ANDROID_HOME="$HOME/Library/Android/sdk"
+# If you are interested in using Android with FastLane for publishing take a look at the Android-Fastlane template.
-  - bundle install
 
+image: openjdk:8-jdk
+
+variables:
+
+  # ANDROID_COMPILE_SDK is the version of Android you're compiling with.
+  # It should match compileSdkVersion.
+  ANDROID_COMPILE_SDK: "29"
+
+  # ANDROID_BUILD_TOOLS is the version of the Android build tools you are using.
+  # It should match buildToolsVersion.
+  ANDROID_BUILD_TOOLS: "29.0.3"
+
+  # It's what version of the command line tools we're going to download from the official site.
+  # Official Site-> https://developer.android.com/studio/index.html
+  # There, look down below at the cli tools only, sdk tools package is of format:
+  #        commandlinetools-os_type-ANDROID_SDK_TOOLS_latest.zip
+  # when the script was last modified for latest compileSdkVersion, it was which is written down below
+  ANDROID_SDK_TOOLS: "6514223"
+
+# Packages installation before running script
 stages:
-- build
+  - build
-- test
+   
-- quality_assurance
+# Packages installation before running script
+before_script:
+  - apt-get --quiet update --yes
+  - apt-get --quiet install --yes wget tar unzip lib32stdc++6 lib32z1
 
-build_job:
+  # Setup path as android_home for moving/exporting the downloaded sdk into it
+  - export ANDROID_HOME="${PWD}/android-home"
+  # Create a new directory at specified location
+  - install -d $ANDROID_HOME
+  # Here we are installing androidSDK tools from official source,
+  # (the key thing here is the url from where you are downloading these sdk tool for command line, so please do note this url pattern there and here as well)
+  # after that unzipping those tools and
+  # then running a series of SDK manager commands to install necessary android SDK packages that'll allow the app to build
+  - wget --output-document=$ANDROID_HOME/cmdline-tools.zip https://dl.google.com/android/repository/commandlinetools-linux-${ANDROID_SDK_TOOLS}_latest.zip
+  # move to the archive at ANDROID_HOME
+  - pushd $ANDROID_HOME
+  - unzip -d cmdline-tools cmdline-tools.zip
+  - popd
+  - export PATH=$PATH:${ANDROID_HOME}/cmdline-tools/tools/bin/
+
+  # Nothing fancy here, just checking sdkManager version
+  - sdkmanager --version
+
+  # use yes to accept all licenses
+  - yes | sdkmanager --sdk_root=${ANDROID_HOME} --licenses || true
+  - sdkmanager --sdk_root=${ANDROID_HOME} "platforms;android-${ANDROID_COMPILE_SDK}"
+  - sdkmanager --sdk_root=${ANDROID_HOME} "platform-tools"
+  - sdkmanager --sdk_root=${ANDROID_HOME} "build-tools;${ANDROID_BUILD_TOOLS}"
+
+  # Not necessary, but just for surity
+  - chmod +x ./gradlew
+
+# Basic android and gradle stuff
+# Check linting
+build_debug:
   stage: build
   script:
-    - ./gradlew clean assembleRelease
+    - ./gradlew assembleDebug
+    - ./gradlew assembleDebugAndroidTest
+
   artifacts:
     paths:
-    - app/build/outputs/
+      - app/build/outputs/
 
-unit_tests:
-  stage: test
-  script:
-    - ./gradlew test
-  artifacts:
-    name: "reports_${CI_PROJECT_NAME}_${CI_BUILD_REF_NAME}"
-    when: on_failure
-    expire_in: 4 days
-    paths:
-      - app/build/reports/tests/
-
-static_analysis:
-  stage: quality_assurance
-  script:
-    - ./gradlew lint
-    - ./gradlew checkstyle
-    - ./gradlew pmd
-    - ./gradlew findbugs
-  artifacts:
-    name: "reports_${CI_PROJECT_NAME}_${CI_BUILD_REF_NAME}"
-    when: on_failure
-    expire_in: 4 days
-    paths:
-      - app/build/reports/
 

.idea/compiler.xml

@@ -1,6 +1,6 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <project version="4">
   <component name="CompilerConfiguration">
-    <bytecodeTargetLevel target="11" />
+    <bytecodeTargetLevel target="1.8" />
   </component>
 </project>

.idea/gradle.xml

@@ -4,7 +4,7 @@
   <component name="GradleSettings">
     <option name="linkedExternalProjectsSettings">
       <GradleProjectSettings>
-        <option name="testRunner" value="PLATFORM" />
+        <option name="testRunner" value="GRADLE" />
         <option name="distributionType" value="DEFAULT_WRAPPED" />
         <option name="externalProjectPath" value="$PROJECT_DIR$" />
         <option name="gradleJvm" value="1.8" />

.idea/misc.xml

@@ -1,6 +1,6 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <project version="4">
-  <component name="ProjectRootManager" version="2" languageLevel="JDK_11" default="false" project-jdk-name="1.8" project-jdk-type="JavaSDK">
+  <component name="ProjectRootManager" version="2" languageLevel="JDK_1_8" default="true" project-jdk-name="1.8" project-jdk-type="JavaSDK">
     <output url="file://$PROJECT_DIR$/build/classes" />
   </component>
   <component name="ProjectType">

.idea/runConfigurations.xml

@@ -1,13 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<project version="4">
-  <component name="RunConfigurationProducerService">
-    <option name="ignoredProducers">
-      <set>
-        <option value="com.android.tools.idea.compose.preview.runconfiguration.ComposePreviewRunConfigurationProducer" />
-        <option value="org.jetbrains.plugins.gradle.execution.test.runner.AllInPackageGradleConfigurationProducer" />
-        <option value="org.jetbrains.plugins.gradle.execution.test.runner.TestClassGradleConfigurationProducer" />
-        <option value="org.jetbrains.plugins.gradle.execution.test.runner.TestMethodGradleConfigurationProducer" />
-      </set>
-    </option>
-  </component>
-</project>

app/build.gradle

@@ -10,6 +10,7 @@ android {
         targetSdkVersion 30
         versionCode 1
         versionName "1.0"
+        multiDexEnabled true
 
         testInstrumentationRunner "androidx.test.runner.AndroidJUnitRunner"
     }
@@ -24,6 +25,9 @@ android {
         sourceCompatibility JavaVersion.VERSION_1_8
         targetCompatibility JavaVersion.VERSION_1_8
     }
+    configurations.all {
+        resolutionStrategy.force 'com.google.android.gms:play-services-base:17.1.0'
+    }
 }
 
 dependencies {
@@ -33,9 +37,13 @@ dependencies {
     implementation 'com.google.android.material:material:1.0.0'
     implementation 'com.github.felHR85:UsbSerial:6.1.0'
     implementation 'com.github.ybq:Android-SpinKit:1.4.0'
+    implementation 'com.google.android.gms:play-services-base:17.1.0'
 
+    implementation 'org.apache.poi:poi:4.0.0'
+    implementation 'org.apache.poi:poi-ooxml:4.0.0'
     testImplementation 'junit:junit:4.12'
     androidTestImplementation 'androidx.test.ext:junit:1.1.1'
     androidTestImplementation 'androidx.test.espresso:espresso-core:3.2.0'
+    implementation 'com.karumi:dexter:6.2.2'
 
 }

app/src/main/AndroidManifest.xml

@@ -1,30 +1,78 @@
 <?xml version="1.0" encoding="utf-8"?>
 <manifest xmlns:android="http://schemas.android.com/apk/res/android"
+    xmlns:tools="http://schemas.android.com/tools"
     package="shanmukha.in.sickle_cell">
 
     <uses-feature android:name="android.hardware.usb.host" />
+    <uses-permission android:name="android.permission.WRITE_EXTERNAL_STORAGE" />
+    <uses-permission android:name="android.permission.READ_EXTERNAL_STORAGE" />
+    <uses-permission android:name="android.permission.CAMERA" />
+    <uses-permission android:name="android.permission.WRITE_EXTERNAL_STORAGE" />
+    <uses-permission android:name="android.permission.ACCESS_COARSE_LOCATION" />
+    <uses-permission android:name="android.permission.ACCESS_NETWORK_STATE" />
+    <uses-permission android:name="android.permission.INTERNET" />
+    <uses-permission android:name="android.permission.ACCESS_FINE_LOCATION" />
+    <uses-permission android:name="android.permission.READ_EXTERNAL_STORAGE" />
+    <uses-permission android:name="android.permission.WRITE_EXTERNAL_STORAGE" />
+    <uses-permission android:name="android.permission.QUERY_ALL_PACKAGES" tools:ignore="QueryAllPackagesPermission" />
+    <uses-permission android:name="android.permission.WRITE_EXTERNAL_STORAGE"/>
+    <uses-permission android:name="android.permission.QUERY_ALL_PACKAGES" tools:ignore="QueryAllPackagesPermission" />
+    <uses-permission android:name="android.permission.MANAGE_EXTERNAL_STORAGE" />
+    <uses-permission android:name="android.permission.MANAGE_EXTERNAL_STORAGE"
+        tools:ignore="ScopedStorage" />
+    <uses-permission android:name="android.permission.ACCESS_COARSE_LOCATION" />
+    <uses-permission android:name="android.permission.ACCESS_NETWORK_STATE" />
+    <uses-permission android:name="android.permission.INTERNET" />
+    <uses-permission android:name="android.permission.ACCESS_FINE_LOCATION" />
+    <uses-permission android:name="android.permission.READ_EXTERNAL_STORAGE" />
+    <uses-permission android:name="android.permission.WRITE_EXTERNAL_STORAGE" />
+
+    <uses-permission android:name="android.permission.WRITE_EXTERNAL_STORAGE" />
+    <uses-permission android:name="android.permission.READ_EXTERNAL_STORAGE" />
+    <uses-permission android:name="android.permission.ACCESS_MEDIA_LOCATION"/>
+    <uses-permission
+        android:name="android.permission.MANAGE_EXTERNAL_STORAGE"
+        tools:ignore="ScopedStorage" />
 
     <application
-        android:allowBackup="true"
+        android:requestLegacyExternalStorage="true"
+        android:preserveLegacyExternalStorage="true"
+
+    android:allowBackup="true"
         android:icon="@drawable/shanmukha_logo_small"
         android:label="@string/app_name"
         android:roundIcon="@drawable/shanmukha_logo_small"
         android:supportsRtl="true"
         android:theme="@style/AppTheme">
-        <activity android:name="shanmukha.in.sickle_cell.UI.SplashScreen" android:screenOrientation="portrait"><intent-filter>
+        <activity
-            <action android:name="android.intent.action.MAIN" />
+            android:name=".UI.SplashScreen"
+            android:screenOrientation="portrait">
 
-            <category android:name="android.intent.category.LAUNCHER" />
-        </intent-filter>
         </activity>
-        <activity android:name="shanmukha.in.sickle_cell.UI.SerialData"  android:screenOrientation="portrait">   <intent-filter>
+        <activity
-            <action android:name="android.hardware.usb.action.USB_DEVICE_ATTACHED" />
+            android:name=".UI.SerialData"
-        </intent-filter></activity>
+            android:screenOrientation="portrait">
+            <intent-filter>
+                <action android:name="android.intent.action.MAIN" />
 
+                <category android:name="android.intent.category.LAUNCHER" />
+            </intent-filter>
+            <intent-filter>
+                <action android:name="android.hardware.usb.action.USB_DEVICE_ATTACHED" />
+            </intent-filter>
+        </activity>
+        <provider
+            android:name="androidx.core.content.FileProvider"
+            android:authorities="${applicationId}.fileprovider"
+            android:exported="false"
+            android:grantUriPermissions="true">
+            <meta-data
+                android:name="android.support.FILE_PROVIDER_PATHS"
+                android:resource="@xml/file_path" />
+        </provider>
         <service
-            android:name="shanmukha.in.sickle_cell.Service.UsbService"
+            android:name=".Service.UsbService"
-            android:enabled="true">
+            android:enabled="true"></service>
-        </service>
     </application>
 
-</manifest>
+</manifest>

app/src/main/java/shanmukha/in/sickle_cell/Service/UsbService.java

@@ -1,28 +1,53 @@
 package shanmukha.in.sickle_cell.Service;
 
+import android.Manifest;
 import android.app.PendingIntent;
+import android.app.ProgressDialog;
 import android.app.Service;
 import android.content.BroadcastReceiver;
 import android.content.Context;
 import android.content.Intent;
 import android.content.IntentFilter;
+import android.content.pm.PackageManager;
 import android.hardware.usb.UsbDevice;
 import android.hardware.usb.UsbDeviceConnection;
 import android.hardware.usb.UsbManager;
 import android.os.Binder;
+import android.os.Environment;
 import android.os.Handler;
 import android.os.IBinder;
 import android.os.Looper;
 import android.util.Log;
 import android.widget.Toast;
 
+import androidx.core.content.ContextCompat;
+
 import com.felhr.usbserial.CDCSerialDevice;
 import com.felhr.usbserial.UsbSerialDevice;
 import com.felhr.usbserial.UsbSerialInterface;
 
+import org.apache.poi.hssf.usermodel.HSSFCell;
+import org.apache.poi.hssf.usermodel.HSSFRow;
+import org.apache.poi.hssf.usermodel.HSSFSheet;
+import org.apache.poi.hssf.usermodel.HSSFWorkbook;
+import org.apache.poi.poifs.filesystem.POIFSFileSystem;
+import org.apache.poi.ss.usermodel.Cell;
+import org.apache.poi.ss.usermodel.Row;
+
+import java.io.BufferedReader;
+import java.io.BufferedWriter;
+import java.io.File;
+import java.io.FileInputStream;
+import java.io.FileReader;
+import java.io.FileWriter;
+import java.io.IOException;
+import java.io.InputStream;
+import java.io.PrintWriter;
 import java.io.UnsupportedEncodingException;
 import java.math.BigDecimal;
+import java.util.ArrayList;
 import java.util.HashMap;
+import java.util.Iterator;
 import java.util.Map;
 
 import shanmukha.in.sickle_cell.Model.PojoParameters;
@@ -32,7 +57,10 @@ import static shanmukha.in.sickle_cell.UI.SerialData.fobj;
 
 public class UsbService extends Service {
     private Context appContext;
-
+    File filePath1 = null;
+    File filePath = null;
+    String directory_path;
+    private ProgressDialog loadingBar;
 
     public static final String TAG = "UsbService";
     public static int tr = 0;
@@ -76,19 +104,21 @@ public class UsbService extends Service {
 
             try {
                 data = new String(arg0, "UTF-8");
+                Log.e("data received",data);
 
                 data.concat("/n");
 
 
                 if (data.contains(",")) {
-
+                    appendLog("Hi");
 
                     String[] namesList = data.split(",");
 
                     BigDecimal d5 = new BigDecimal(namesList[3]);
 
                     ddash_427 = (float) (Float.parseFloat(String.valueOf((d5))) - 427.00);
-                    ddash_555 = (float) (Float.parseFloat(String.valueOf((d5))) - 555.00);
+                    ddash_555 = (float) (Float.parseFloat(String.valueOf((d5))) - 539.00);
+                   // ddash_539 = (float) (Float.parseFloat(String.valueOf((d5))) - 539.00);
 
 
                     BigDecimal d3 = new BigDecimal(namesList[2]);
@@ -351,16 +381,16 @@ public class UsbService extends Service {
         @Override
         public void run() {
             while (true) {
-                byte[] buffer = new byte[100];
+                byte[] buffer = new byte[81024];
                 int n = serialPort.syncRead(buffer, 0);
                 if (n > 0) {
                     byte[] received = new byte[n];
                     System.arraycopy(buffer, 0, received, 0, n);
                     String receivedStr = new String(received);
-                    // Log.e("Recived Data", receivedStr);
                     String data = null;
-
                     data = new String(received);
+                    Log.e("Recived Data",data);
+
 
                     data.concat("/n");
                     if (fobj.getConnect_flag() == 1) {
@@ -442,6 +472,8 @@ public class UsbService extends Service {
                     }
 
                     if (fobj.getRun_flag() == 1) {
+
+
                         if (data.contains(String.valueOf(obj.getX_427()))) {
                             String ds2 = data.substring(data.lastIndexOf(":") + 1).trim();
                             f_427 = ds2;
@@ -463,6 +495,12 @@ public class UsbService extends Service {
 
 
                         }
+                        try {
+                            buttonCreateFile1(data);
+                            readfile1();
+                        } catch (IOException e) {
+                            e.printStackTrace();
+                        }
 
 
                     }
@@ -493,7 +531,14 @@ public class UsbService extends Service {
 
 
                         }
+                        try {
+                            buttonCreateFile(data);
 
+                            readfile();
+
+                        } catch (IOException e) {
+                            e.printStackTrace();
+                        }
 
                     }
 
@@ -535,5 +580,161 @@ public class UsbService extends Service {
             }
         }
     }
+    public void appendLog(String text)
+    {
+        File logFile = new File("sdcard/log.file");
+        if (!logFile.exists())
+        {
+            try
+            {
+                logFile.createNewFile();
+            }
+            catch (IOException e)
+            {
+                // TODO Auto-generated catch block
+                e.printStackTrace();
+            }
+        }
+        try
+        {
+            //BufferedWriter for performance, true to set append to file flag
+            BufferedWriter buf = new BufferedWriter(new FileWriter(logFile, true));
+            buf.append(text);
+            buf.newLine();
+            buf.close();
+        }
+        catch (IOException e)
+        {
+            // TODO Auto-generated catch block
+            e.printStackTrace();
+        }
+    }
+
+
+
+    public void buttonCreateFile1(String data) throws IOException {
+        String directory_path = Environment.getExternalStorageDirectory().getPath() + "/Test Report/";
+        File file = new File(directory_path);
+        if (!file.exists()) {
+            file.mkdirs();
+        }
+        File file1 = new File(directory_path, "Data_Run" +".txt");
+        if (!file1.exists()) {
+
+            file1.createNewFile();
+
+        }
+        PrintWriter writer = new PrintWriter(file1);
+        writer.print("");
+// other operations
+        writer.close();
+        FileWriter writer1 = new FileWriter(file1, true);
+        writer1.append(data);
+        writer1.flush();
+        writer1.close();
+
+
+
+
+
+
+
+
+        }
+    public void buttonCreateFile(String data) throws IOException {
+        String directory_path = Environment.getExternalStorageDirectory().getPath() + "/Test Report/";
+        File file = new File(directory_path);
+        if (!file.exists()) {
+
+            file.mkdirs();
+        }
+        File file1 = new File(directory_path, "Data_Baseline" +".txt");
+        if (!file1.exists()) {
+
+            file1.createNewFile();
+
+        }
+        PrintWriter writer = new PrintWriter(file1);
+        writer.print("");
+// other operations
+        writer.close();
+        FileWriter writer1 = new FileWriter(file1, true);
+        writer1.append(data);
+        writer1.flush();
+        writer1.close();
+
+
+
+
+
+
+
+
+    }
+
+        public void readfile()
+        {
+            String directory_path = Environment.getExternalStorageDirectory().getPath() + "/Test Report/";
+            File file = new File(directory_path, "Data_Baseline" +".txt");
+
+
+
+
+//Get the text file
+
+//Read text from file
+            StringBuilder text = new StringBuilder();
+
+            try {
+                BufferedReader br = new BufferedReader(new FileReader(file));
+                String line;
+
+                while ((line = br.readLine()) != null) {
+                    Thread.sleep(3);
+                   // Log.e("text", line);
+                   /* text.append(line);
+                    text.append('\n');*/
+                }
+                br.close();
+            }
+            catch (IOException | InterruptedException e) {
+                //You'll need to add proper error 1handling here
+            }
+
+//Find the view by its id
+
+        }
+    public void readfile1()
+    {
+        String directory_path = Environment.getExternalStorageDirectory().getPath() + "/Test Report/";
+        File file = new File(directory_path, "Data_Run" +".txt");
+
+
+
+
+//Get the text file
+
+//Read text from file
+        StringBuilder text = new StringBuilder();
+
+        try {
+            BufferedReader br = new BufferedReader(new FileReader(file));
+            String line;
+
+            while ((line = br.readLine()) != null) {
+                Thread.sleep(1);
+             //   Log.e("text", line);
+                   /* text.append(line);
+                    text.append('\n');*/
+            }
+            br.close();
+        }
+        catch (IOException | InterruptedException e) {
+            //You'll need to add proper error 1handling here
+        }
+
+//Find the view by its id
+
+    }
 
 }

app/src/main/java/shanmukha/in/sickle_cell/UI/SerialData.java

@@ -1,5 +1,6 @@
 package shanmukha.in.sickle_cell.UI;
 
+import android.Manifest;
 import android.app.AlertDialog;
 import android.app.PendingIntent;
 import android.content.BroadcastReceiver;
@@ -10,20 +11,36 @@ import android.content.Intent;
 import android.content.IntentFilter;
 import android.content.ServiceConnection;
 import android.hardware.usb.UsbDevice;
+import android.net.Uri;
+import android.os.Build;
 import android.os.Bundle;
+import android.os.Environment;
 import android.os.Handler;
 import android.os.IBinder;
 import android.os.Message;
+import android.provider.Settings;
 import android.util.Log;
 import android.view.View;
 import android.widget.Button;
 import android.widget.TextView;
 import android.widget.Toast;
 
+import androidx.annotation.RequiresApi;
 import androidx.appcompat.app.AppCompatActivity;
+import androidx.core.app.ActivityCompat;
+
+import com.karumi.dexter.Dexter;
+import com.karumi.dexter.MultiplePermissionsReport;
+import com.karumi.dexter.PermissionToken;
+import com.karumi.dexter.listener.PermissionDeniedResponse;
+import com.karumi.dexter.listener.PermissionGrantedResponse;
+import com.karumi.dexter.listener.PermissionRequest;
+import com.karumi.dexter.listener.multi.MultiplePermissionsListener;
+import com.karumi.dexter.listener.single.PermissionListener;
 
 import java.lang.ref.WeakReference;
 import java.util.HashMap;
+import java.util.List;
 import java.util.Map;
 import java.util.Set;
 
@@ -96,6 +113,7 @@ public class SerialData extends AppCompatActivity {
         }
     };
 
+
     @Override
     protected void onCreate(Bundle savedInstanceState) {
         super.onCreate(savedInstanceState);
@@ -104,6 +122,71 @@ public class SerialData extends AppCompatActivity {
         mHandler = new MyHandler(this);
         textViewTitle = findViewById(R.id.textViewTitle1);
 
+
+        Dexter.withContext(this)
+                .withPermissions(
+                        Manifest.permission.MANAGE_EXTERNAL_STORAGE,
+                        Manifest.permission.READ_EXTERNAL_STORAGE
+                ).withListener(new MultiplePermissionsListener() {
+            @RequiresApi(api = Build.VERSION_CODES.R)
+            @Override public void onPermissionsChecked(MultiplePermissionsReport report) {
+
+
+                if (Build.VERSION.SDK_INT == Build.VERSION_CODES.Q) {
+                    Dexter.withContext(getApplicationContext())
+                            .withPermission(Manifest.permission.READ_EXTERNAL_STORAGE)
+                            .withListener(new PermissionListener() {
+                                @Override
+                                public void onPermissionGranted(PermissionGrantedResponse permissionGrantedResponse) {
+                                    Toast.makeText(SerialData.this, "allowed", Toast.LENGTH_SHORT).show();
+
+                                }
+
+                                @Override
+                                public void onPermissionDenied(PermissionDeniedResponse permissionDeniedResponse) {
+
+                                }
+
+                                @Override
+                                public void onPermissionRationaleShouldBeShown(PermissionRequest permissionRequest, PermissionToken permissionToken) {
+                                    permissionToken.continuePermissionRequest();
+                                }
+                            }).check();
+
+
+
+
+
+                    ActivityCompat.requestPermissions(SerialData.this,
+                            new String[]{Manifest.permission.READ_EXTERNAL_STORAGE}, 1);
+                }
+
+
+
+
+
+
+
+
+              else   if (!Environment.isExternalStorageManager()) {
+                    Intent intent = new Intent();
+                    intent.setAction(Settings.ACTION_MANAGE_APP_ALL_FILES_ACCESS_PERMISSION);
+                    Uri uri = Uri.fromParts("package", "shanmukha.in.sickle_cell", null);
+                    intent.setData(uri);
+                    startActivity(intent);
+                    Toast.makeText(SerialData.this, "allowed", Toast.LENGTH_SHORT).show();
+                }
+            }
+            @Override public void onPermissionRationaleShouldBeShown(List<PermissionRequest> permissions, PermissionToken token) {                     token.continuePermissionRequest();
+            }
+        }).check();
+
+        ActivityCompat.requestPermissions(this,
+                new String[]{
+                        Manifest.permission.MANAGE_EXTERNAL_STORAGE}, 1);
+
+        ActivityCompat.requestPermissions(this,
+                new String[]{Manifest.permission.READ_EXTERNAL_STORAGE}, 0);
         Button sendButton = (Button) findViewById(R.id.buttonSend);
         Button baseli = (Button) findViewById(R.id.baseline_c);
         Button runi = (Button) findViewById(R.id.run_c);
@@ -139,22 +222,43 @@ public class SerialData extends AppCompatActivity {
 
 
                                 try {
-                                    String string22 = "led2 50\r";
+                                    String string23 = "led1 50\r";
-
+                                    usbService.write(string23.getBytes());
-                                    usbService.write(string22.getBytes());
                                     Thread.sleep(2000);
-
                                     String string1 = "autoset\r";
                                     usbService.write(string1.getBytes());
                                     Thread.sleep(2000);
 
                                     Thread.sleep(Long.parseLong("1000"));
                                     String string4 = "run\r";
+                                    Thread.sleep(2000);
+
+                                    usbService.write(string4.getBytes());
+                                    Thread.sleep(2000);
 
 
                                     Thread.sleep(2000);
 
-                                    usbService.write(string4.getBytes());
+
+
+                                    String string22 = "led2 0\r";
+
+
+
+                                    usbService.write(string22.getBytes());
+                                    Thread.sleep(2000);
+
+                                    String string2 = "autoset\r";
+                                    usbService.write(string2.getBytes());
+                                    Thread.sleep(2000);
+
+                                    Thread.sleep(Long.parseLong("1000"));
+                                    String string6 = "run\r";
+
+
+                                    Thread.sleep(2000);
+
+                                    usbService.write(string6.getBytes());
                                     Thread.sleep(2000);
 
                                     int number427 = Integer.valueOf(obj.getX_427());
@@ -322,15 +426,19 @@ public class SerialData extends AppCompatActivity {
 
                         Log.e("O 427 pixel ", obj.getO_427());
 
+                        ab_427 = Math.log10(Double.parseDouble(obj.getI_427())/Double.parseDouble(obj.getF_427()));
+                        ab_555= Math.log10(Double.parseDouble(obj.getI_555())/Double.parseDouble(obj.getF_555()));
 
-                        ab_427 = Math.log10(Double.parseDouble(obj.getO_427()) / (Double.parseDouble(obj.getI_427()) - Double.parseDouble(obj.getF_427())));
+                        Log.e("ab 427", String.valueOf(ab_427));
+
+                      /*  ab_427 = Math.log10(Double.parseDouble(obj.getO_427()) / (Double.parseDouble(obj.getI_427()) - Double.parseDouble(obj.getF_427())));
                         Log.e("without log value 427", String.valueOf(Double.parseDouble(obj.getO_427()) / (Double.parseDouble(obj.getI_427()) - Double.parseDouble(obj.getF_427()))));
                         Log.e("ab 427", String.valueOf(ab_427));
 
 
                         ab_555 = Math.log10(Double.parseDouble(obj.getO_555()) / (Double.parseDouble(obj.getI_555()) - Double.parseDouble(obj.getF_555())));
                         Log.e("without log value 555", String.valueOf(Double.parseDouble(obj.getO_555()) / (Double.parseDouble(obj.getI_555()) - Double.parseDouble(obj.getF_555()))));
-
+*/
                         Log.e("ab 555 ", String.valueOf(ab_555));
 
                         ratio = ab_555 / ab_427;
@@ -418,6 +526,14 @@ public class SerialData extends AppCompatActivity {
                         usbService.write(string45.getBytes());
                         Thread.sleep(4000);
 
+                        String string23 = "print 1 3694\r";
+                        Thread.sleep(3000);
+
+                        usbService.write(string23.getBytes());
+                        Thread.sleep(5000);
+
+
+
 
                     } catch (Exception e) {
                         Toast.makeText(SerialData.this, "Perform Run Step Again ", Toast.LENGTH_SHORT).show();
@@ -476,21 +592,32 @@ public class SerialData extends AppCompatActivity {
                             if (flag == 0) {
 
 
-                                String string22 = "led2 50\r";
 
-                                usbService.write(string22.getBytes());
-                                String string1 = "autoset\r";
-                                usbService.write(string1.getBytes());
 
 
                                 try {
+                                    String string22 = "led2 25\r";
+
+                                    usbService.write(string22.getBytes());
+
                                     Thread.sleep(Long.parseLong("1000"));
-                                    String string4 = "run\r";
+
+
+
+
+
+
+
+
+                                    String string7 = "autoset\r";
+                                    usbService.write(string7.getBytes());
+                                    Thread.sleep(Long.parseLong("1000"));
+                                    String string8 = "run\r";
 
 
                                     Thread.sleep(2000);
 
-                                    usbService.write(string4.getBytes());
+                                    usbService.write(string8.getBytes());
                                     Thread.sleep(2000);
 
                                     int number427 = Integer.valueOf(obj.getX_427());
@@ -512,6 +639,21 @@ public class SerialData extends AppCompatActivity {
                                     Thread.sleep(4000);
 
 
+
+
+                                        String string23 = "print 1 3694\r";
+                                        Thread.sleep(3000);
+
+                                        usbService.write(string23.getBytes());
+                                        Thread.sleep(5000);
+
+
+
+
+
+
+
+
                                     if (obj.getI_427() == null && "".equals(obj.getI_427())) {
                                         Toast.makeText(SerialData.this, "Perform Baseline Step Again ", Toast.LENGTH_SHORT).show();
 
@@ -552,6 +694,7 @@ public class SerialData extends AppCompatActivity {
                     alert.show();
 
 
+
                 } else {
                     fobj.setBaseline_flag(1);
                     fobj.setRun_flag(0);
@@ -597,6 +740,13 @@ public class SerialData extends AppCompatActivity {
 
 
                             Thread.sleep(4000);
+                            String string23 = "print 1 3694\r";
+                            Thread.sleep(3000);
+
+                            usbService.write(string23.getBytes());
+                            Thread.sleep(5000);
+
+
 
 
                             if (obj.getI_427() == null && "".equals(obj.getI_427())) {
@@ -626,6 +776,7 @@ public class SerialData extends AppCompatActivity {
 
                     sta.setBase_para_flag(1);
 
+
                 }
 
 
@@ -665,9 +816,12 @@ public class SerialData extends AppCompatActivity {
                                 new Handler().postDelayed(new Runnable() {
                                     @Override
                                     public void run() {
-                                        String string22 = "read\r";
+                                    /*    String string22 = "read\r";
-
                                         usbService.write(string22.getBytes());
+*/
+                                        String string22 = "read\r";
+                                        usbService.write(string22.getBytes());
+
 
 
                                     }
@@ -713,7 +867,8 @@ public class SerialData extends AppCompatActivity {
                     if (flag == 0) {
 
 
-                        new Handler().postDelayed(new Runnable() {
+
+                       new Handler().postDelayed(new Runnable() {
                             @Override
                             public void run() {
                                 String string22 = "read\r";
@@ -721,6 +876,7 @@ public class SerialData extends AppCompatActivity {
                                 usbService.write(string22.getBytes());
 
 
+
                             }
                         }, 5000);
 

app/src/main/res/xml/file_path.xml

@@ -0,0 +1,3 @@
+<paths xmlns:android="http://schemas.android.com/apk/res/android">
+    <external-path name="external_files" path="."/>
+</paths>