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ShanMukha Innovations
2018-08-06 13:22:36 +05:30
parent da62f42d00
commit 47a3cea544
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function varargout = Beginner4(varargin)
% BEGINNER4 MATLAB code for Beginner4.fig
% BEGINNER4, by itself, creates a new BEGINNER4 or raises the existing
% singleton*.
%
% H = BEGINNER4 returns the handle to a new BEGINNER4 or the handle to
% the existing singleton*.
%
% BEGINNER4('CALLBACK',hObject,eventData,handles,...) calls the local
% function named CALLBACK in BEGINNER4.M with the given input arguments.
%
% BEGINNER4('Property','Value',...) creates a new BEGINNER4 or raises
% the existing singleton*. Starting from the left, property value pairs are
% applied to the GUI before Beginner4_OpeningFcn gets called. An
% unrecognized property name or invalid value makes property application
% stop. All inputs are passed to Beginner4_OpeningFcn via varargin.
%
% *See GUI Options on GUIDE's Tools menu. Choose "GUI allows only one
% instance to run (singleton)".
%
% See also: GUIDE, GUIDATA, GUIHANDLES
% Edit the above text to modify the response to help Beginner4
% Last Modified by GUIDE v2.5 23-May-2018 01:44:50
% Begin initialization code - DO NOT EDIT
gui_Singleton = 1;
gui_State = struct('gui_Name', mfilename, ...
'gui_Singleton', gui_Singleton, ...
'gui_OpeningFcn', @Beginner4_OpeningFcn, ...
'gui_OutputFcn', @Beginner4_OutputFcn, ...
'gui_LayoutFcn', [] , ...
'gui_Callback', []);
if nargin && ischar(varargin{1})
gui_State.gui_Callback = str2func(varargin{1});
end
if nargout
[varargout{1:nargout}] = gui_mainfcn(gui_State, varargin{:});
else
gui_mainfcn(gui_State, varargin{:});
end
% End initialization code - DO NOT EDIT
% --- Executes just before Beginner4 is made visible.
function Beginner4_OpeningFcn(hObject, eventdata, handles, varargin)
% This function has no output args, see OutputFcn.
% hObject handle to figure
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% varargin command line arguments to Beginner4 (see VARARGIN)
% Choose default command line output for Beginner4
handles.output = hObject;
handles.Load_RADIO ='Images';
axes(handles.axes7);cla;imshow((imread('lines.png')),[]);
axes(handles.axes8);cla;imshow(imread('Shan_Logo1.jpg'),[]);
axes(handles.axes6);cla;imshow(imread('iisc_logo.png'),[]);
seting_buttons_state(hObject, eventdata, handles,0)
set(handles.push_start_DIC, 'Enable','off');
set(handles.Status_check,'String','In pixels');
% set(handles.txt_ref, 'String','Hi');
handles.image_crop =0;
% show_the_image1()
% handles.aarea = 'Default';
% handles.filename_RADIO ='DEFORMED';
handles.val_overlap= 0.5;
handles.val_windowsize_x = 64;
handles.val_windowsize_y = 64;
handles.val_dicmethod = 'method_2';
% handles.flg1= 0;
handles.displayData = 'U';
handles.scal =1;
handles.val_scal=1;
handles.Logfile =1;
handles.select_resolution=0;
axes(handles.axes3);cla;imshow(imread('p1.png') ,[]);
set(handles.checkbox1_LogFile,'Value',1);
seting_buttons_state(hObject, eventdata, handles,0)
% set(handles.TEXT2,'String','In pixels');
% set(handles.Status_check,'String','In pixels');
% Update handles structurelogfile
guidata(hObject, handles);
% UIWAIT makes Beginner4 wait for user response (see UIRESUME)
% uiwait(handles.figure1);
% --- Outputs from this function are returned to the command line.
function varargout = Beginner4_OutputFcn(hObject, eventdata, handles)
% varargout cell array for returning output args (see VARARGOUT);
% hObject handle to figure
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% Get default command line output from handles structure
varargout{1} = handles.output;
% --- Executes on button press in LogFile_check.
function LogFile_check_Callback(hObject, eventdata, handles)
% hObject handle to LogFile_check (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% Hint: get(hObject,'Value') returns toggle state of LogFile_check
% --- Executes on button press in push_load_reference.
function push_load_reference_Callback(hObject, eventdata, handles)
% hObject handle to push_load_reference (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% --- Executes on button press in push_load_deformed.
function push_load_deformed_Callback(hObject, eventdata, handles)
% hObject handle to push_load_deformed (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% --- Executes on button press in push_startDIC.
function push_startDIC_Callback(hObject, eventdata, handles)
% hObject handle to push_startDIC (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% --- Executes on button press in pushbutton5.
function pushbutton5_Callback(hObject, eventdata, handles)
% hObject handle to pushbutton5 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% --- Executes on button press in checkbox1_LogFile.
function checkbox1_LogFile_Callback(hObject, eventdata, handles)
% hObject handle to checkbox1_LogFile (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% Hint: get(hObject,'Value') returns toggle state of checkbox1_LogFile
handles.Logfile= get(hObject,'Value');
guidata(hObject, handles)
% --- Executes on button press in push_start_DIC.
function push_start_DIC_Callback(hObject, eventdata, handles)
% hObject handle to push_start_DIC (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
Files = dir(handles.path);
% tmp=length(Files)
[~,Ref_name,EXT] = fileparts(handles.val_filename_1);
tmpp=0;
if iscell(handles.def_name)==1
tmpp = numel(handles.def_name);
FFiles=handles.def_name;
else
tmpp = 1;
FFiles={handles.def_name};
end
frame_no=tmpp;
try
[user_response, destination ] = gui_confirm_DICstart2(tmpp,handles.path);
catch
user_response='NO';
end
switch lower(user_response)
case 'no'
% take no action
case 'yes'
seting_buttons_state11(hObject, eventdata, handles,0)
pause(0.1)
% s1= handles.val_filename_1;
% s=strfind(s1,'.');s1(s(end)+1:length(s1)-1);
%
imr11 = imread(handles.val_filename_1);
IM1 = imr11;
imr1=preset_image(imr11);
flies = {};
M=[];
hhhh = waitbar(0,'Please wait...');
DATA=[];
kkk=0;
for k =1:tmpp
waitbar(k/length(Files),hhhh);
FileNames = FFiles{k};
file = strcat(handles.path, FFiles{k});
DefaultORcrop='Full Frame';
if strcmp(file, handles.val_filename_1)==0
imr22 = imread(file);
imr2=preset_image(imr22);
DefaultORcrop='Full Frame';
if handles.image_crop ==1
DefaultORcrop='Crop';
yD= handles.Cordinates;
im1 = imr1( yD(2):yD(2)+yD(4),yD(1):yD(1)+yD(3),:);
im2 = imr2( yD(2):yD(2)+yD(4),yD(1):yD(1)+yD(3),:);
IM = IM1( yD(2):yD(2)+yD(4),yD(1):yD(1)+yD(3),:);
else handles.image_crop ==0;
im1 = imr1;
im2 = imr2;
IM = IM1;
end
windowsize_x = handles.val_windowsize_x;
windowsize_y= handles.val_windowsize_y;
overlap= handles.val_overlap;
iu_max =32;
iv_max =32;
dt = 1;
dic_type = handles.val_dicmethod;
i_recur = 1;
i_plot=0;
[MM, AA]=DIC_Data_check_Beginner3(im1, im2, windowsize_x, windowsize_y, overlap, iu_max, iv_max,...
handles.scal,FileNames, IM,destination, handles.val_dicmethod,handles.select_resolution, handles.Cordinates, IM1);
% figure,imshow(im2,[]), title(strcat('Vector Field:-:', FileNames))
else
MM = [0 0 0 0 0 0 0 0];
dic_type = 'Not-Procssed, Same Image';
windowsize_x = 0;
overlap=0;
end
flies{k} = FileNames;
M=[M;MM];
AA.name=FileNames;
DATA{k}=AA;
end
% % save strcat(destination, 'DATA') DATA;
des=strcat(destination,'\DATA');
save(des,'DATA')
if (handles.Logfile==1), myLogfile(destination, 'Image',frame_no,DefaultORcrop, Ref_name, dic_type, ...
windowsize_x,overlap); end
M = round(M*1000)/1000;
seting_buttons_state11(hObject, eventdata, handles,1)
try
close(hhhh)
catch
end
Mean_U = M(:,1);
Mean_V = M(:,2);
MIN_U = M(:,3);
MAX_U = M(:,4);
MIN_V = M(:,5);
MAX_V = M(:,6);
StdDev_U = M(:,7);
StdDev_V = M(:,8);
% Tabb11 = table(flies', Mean_U, Mean_V, StdDev_U, StdDev_V );
Tabb11 = table(flies', Mean_U, Mean_V, MIN_U, MAX_U, MIN_V, MAX_V,StdDev_U, StdDev_V );
writetable(Tabb11,strcat(destination, '\result11_summary' ))
end
guidata(hObject, handles)
% --- Executes on button press in pushbutton9.
function pushbutton9_Callback(hObject, eventdata, handles)
% hObject handle to pushbutton9 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
open('Help_DIC_BJ2.pdf');
% --- Executes on button press in push_reference.
function push_reference_Callback(hObject, eventdata, handles)
% hObject handle to push_reference (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
Sw= handles.Load_RADIO;
switch Sw
case {'Images'}
files= uigetfile_with_preview2();
if ~strcmp(files,'')
seting_buttons(hObject, eventdata, handles);
seting_buttons_state(hObject, eventdata, handles,0)
set(handles.push_deformed, 'Enable','on');
% % % seting_buttons_state(hObject, eventdata, handles,1)
s=files; s=s(1:max(find(s=='\'))); pathname=s;
s=files; s=s(max(find(s=='\'))+1:end); filename=s;
handles.val_filename_1 = strcat(pathname, filename);
set(handles.txt_ref, 'String','filename');
guidata(hObject, handles);
% set(handles.push_reference,'String',filename);
set(handles.txt_ref, 'String', filename );
tmp = imread(handles.val_filename_1);
handles.val_file_1 = (tmp);
[~,~,EXT] = fileparts(handles.val_filename_1);
handles.EXT=EXT;
handles.path= pathname;
handles.Cordinates = [1 1 size(handles.val_file_1,2) size(handles.val_file_1,1)];
handles.Scal=1;
set(handles.Status_check ,'String',' ');
handles.image_crop =0;
guidata(hObject, handles);
files= dir(pathname);
axes(handles.axes3);cla;imshow(handles.val_file_1 ,[]);
set(handles.number_image,'String','');
end
% end
case {'Video'}
otherwise
disp('Unknown method')
end
set(handles.push_start_DIC, 'Enable','off');
% --- Executes on button press in push_deformed.
function push_deformed_Callback(hObject, eventdata, handles)
% hObject handle to push_deformed (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% % % Files = dir(handles.path);
% tmp=length(Files)
try
[~,Ref_name,EXT] = fileparts(handles.val_filename_1);
catch
EXT = 0;
end
% % % % % % % % % % % % % tmp=0;
[filename_def, pathname_def, filterindex_def] = uigetfile( ...
{strcat('*', EXT), strcat(EXT,'-files') }, ...
'MultiSelect', 'on', 'Selet the DEFORMED images', handles.path);
handles.def_name= filename_def;
handles.def_path= pathname_def;
handles.correctSelect= filterindex_def;
% % set(handles.push_deformed,'String',filename_def(end));
im1=imread(handles.val_filename_1);
if filterindex_def==1
seting_buttons_state(hObject, eventdata, handles,1)
if iscell(filename_def)==1
tmp = strcat(num2str(numel(filename_def)), 'files selected');
% set(handles.push_deformed,'String',filename_def{end});
im2 = imread(strcat(pathname_def, filename_def{end}));
axes(handles.axes3);cla;imshow(imread(strcat(pathname_def,filename_def{end})) ,[]);
set(handles.push_start_DIC, 'Enable','on');
else
tmp = strcat('1', 'files selected');
% set(handles.push_deformed,'String',filename_def);
im2 = imread(strcat(pathname_def, filename_def));
axes(handles.axes3);cla;imshow(imread(strcat(pathname_def,filename_def)) ,[]);
set(handles.push_start_DIC, 'Enable','on');
end
set(handles.number_image,'String',tmp);
if ~(isequal(size(im1),size(im2)))
gui_DIC_sizeCheck1('Title','ERROR');
tmp = strcat('0', 'files selected');
set(handles.number_image,'String',tmp);
set(handles.push_start_DIC, 'Enable','off');
seting_buttons_state(hObject, eventdata, handles,0);
set(handles.push_deformed, 'Enable','on');
end
else
tmp = strcat('0', 'files selected');
set(handles.number_image,'String',tmp);
set(handles.push_start_DIC, 'Enable','off');
end
seting_buttons(hObject, eventdata, handles);
guidata(hObject, handles);
% --- Executes when selected object is changed in uibuttongroup5.
function uibuttongroup5_SelectionChangedFcn(hObject, eventdata, handles)
% hObject handle to the selected object in uibuttongroup5
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
c= get(hObject,'String');
%%%%%%%%%%%seting_buttons_state(hObject, eventdata, handles,0);
% set(handles.push_reference,'String','Reference');
% set(handles.push_deformed,'String','Deformed');
seting_buttons_state(hObject, eventdata, handles,0);
switch c
case {'Images'}
handles.Load_RADIO ='Images';
% guidata(hObject, handles);
case 'Video'
handles.Load_RADIO ='Video';
EXT='avi';
[filename_def, pathname_def, filterindex_def] = uigetfile( ...
{strcat('*', EXT), strcat(EXT,'-files') });
if filterindex_def==1
% seting_buttons_state(hObject, eventdata, handles,1)
% set(handles.number_image,'String',tmp);
mkdir(pathname_def,'images101');
vdo= VideoReader(strcat(pathname_def, '\' ,filename_def));
ii = 1;
while hasFrame(vdo)
img = readFrame(vdo);
filename = [sprintf('%03d',ii) '.jpg'];
fullname = fullfile(pathname_def, 'images101',filename);
imwrite(img,fullname) % Write out to a JPEG file (img1.jpg, img2.jpg, etc.)
ii = ii+1;
end
handles.path= pathname_def;
handles.Load_RADIO ='Images';
guidata(hObject, handles)
else
handles.Load_RADIO ='Images';
seting_buttons_state(hObject, eventdata, handles,0)
set(handles.radiobutton14, 'Value',0);
set(handles.radiobutton13, 'Value',1);
guidata(hObject, handles)
% tmp = strcat('0', 'files selected');
% set(handles.number_image,'String',tmp);
% set(handles.push_start_DIC, 'Enable','off');
end
% guidata(hObject, handles);
otherwise
disp('Unknown method')
end
seting_buttons(hObject, eventdata, handles);
guidata(hObject, handles);
function seting_buttons(hObject, eventdata, handles)
button_list1 =[ handles.radio_scal_full handles.radio_Scal_inpixel ];
button_list2 =[ handles.radio_scal_crop handles.radio_Scal_inmicron];
set(button_list1, 'Value',1);
set(button_list2, 'Value',0);
guidata(hObject, handles);
function seting_buttons_state11(hObject, eventdata, handles,flg)
button_list1 =[ handles.radio_scal_full handles.radio_Scal_inpixel handles.push_start_DIC];
button_list2 =[ handles.radio_scal_crop handles.radio_Scal_inmicron handles.push_deformed];
button_list3 =[handles.push_reference];
if flg==0
set(button_list1, 'Enable','off');
set(button_list2, 'Enable','off');
set(button_list3, 'Enable','off');end
if flg==1
set(button_list1, 'Enable','on');
set(button_list2, 'Enable','on');
set(button_list3, 'Enable','on'); end
guidata(hObject, handles);
function seting_buttons_state(hObject, eventdata, handles,flg)
button_list1 =[ handles.radio_scal_full handles.radio_Scal_inpixel handles.push_start_DIC];
button_list2 =[ handles.radio_scal_crop handles.radio_Scal_inmicron handles.push_deformed];
if flg==0
set(button_list1, 'Enable','off');
set(button_list2, 'Enable','off'); end
if flg==1
set(button_list1, 'Enable','on');
set(button_list2, 'Enable','on'); end
guidata(hObject, handles);
% --- Executes on button press in radio_scal_full.
function radio_scal_full_Callback(hObject, eventdata, handles)
% hObject handle to radio_scal_full (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% Hint: get(hObject,'Value') returns toggle state of radio_scal_full
% --- Executes on button press in radio_Scal_inmicron.
function radio_Scal_inmicron_Callback(hObject, eventdata, handles)
% hObject handle to radio_Scal_inmicron (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% Hint: get(hObject,'Value') returns toggle state of radio_Scal_inmicron
% --- Executes during object creation, after setting all properties.
function number_image_CreateFcn(hObject, eventdata, handles)
% hObject handle to number_image (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles empty - handles not created until after all CreateFcns called
% --- Executes when selected object is changed in uibuttongroup6.
function uibuttongroup6_SelectionChangedFcn(hObject, eventdata, handles)
% hObject handle to the selected object in uibuttongroup6
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
handles.aarea= get(hObject,'String');
% ea= get(hObject,'value')
switch handles.aarea
case {'Crop'}
% handles.val_filename_Crop = imread(handles.val_filename_2);
% imtool(handles.val_filename_Crop )
handles.image_crop =1;
% handles.val_filename_Crop = handles.val_file_1 ; handles.val_filename_1
handles.val_filename_Crop = imread(handles.val_filename_1);
[~, yD1 ]= gui_Image_Crop_1(handles.val_filename_Crop);
if ~isempty(yD1)
if numel(size(handles.val_filename_Crop))==2
s = size(handles.val_filename_Crop); s(3)=1;
elseif numel(size(handles.val_filename_Crop))==3
s = size(handles.val_filename_Crop);
end
yD = cordinate_filter_mex(yD1, s);
else yD=[];
end
if ~isempty(yD)
yD= round(yD);
handles.Cordinates=yD;
handles.val_filename_Crop = ...
handles.val_filename_Crop( yD(2):yD(2)+yD(4),yD(1):yD(1)+yD(3),:);
axes(handles.axes3);cla;imshow(handles.val_filename_Crop)
handles.file_1 = handles.val_file_1;
guidata(hObject, handles);
else
seting_buttons(hObject, eventdata, handles);
handles.image_crop =0;
guidata(hObject, handles);
end
case {'Full Frame'}
handles.image_crop =0;
handles.val_file_1 = imread(handles.val_filename_1);
axes(handles.axes3);cla;imshow(handles.val_file_1 )
handles.file_1 = handles.val_file_1;
handles.Cordinates = [1 1 size(handles.val_file_1,2) size(handles.val_file_1,1)];
guidata(hObject, handles);
end
% --- Executes when selected object is changed in uibuttongroup7.
function uibuttongroup7_SelectionChangedFcn(hObject, eventdata, handles)
% hObject handle to the selected object in uibuttongroup7
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
cc= get(hObject,'String');
switch cc
case {'In pixels'}
handles.Scal=1;
% guidata(hObject, handles);
tmp3= 'In Pixels';
handles.select_resolution=0;
guidata(hObject, handles);
% set(handles.TEXT2,'String',tmp3);
set(handles.Status_check,'String',tmp3);
case 'In micron'
try
% BIKI=gui_set_resolution_3(handles.path,handles.EXT);
BIKI=gui_set_resolution_3(1,handles.path,handles.EXT);
catch
BIKI='aadata';
end
if ~ strcmp(BIKI,'aadata')
BJ = BIKI;
if isstr(BIKI), BIKI=str2num(BIKI); end
if ~isstr(BJ), BJ=num2str(BJ); end
tmp3= strcat('1 pixel= ',BJ,' micron');
% set(handles.TEXT2,'String',tmp3);
set(handles.Status_check ,'String',tmp3);
handles.scal=BIKI;
handles.select_resolution=1;
else
% set(handles.Status_check ,'String','NOT Selected', 'DefaultTextColor','green');
set(handles.radio_Scal_inmicron, 'Value',0);
set(handles.radio_Scal_inpixel, 'Value',1);
set(handles.Status_check ,'String','In Pixel', 'DefaultTextColor','green');
handles.scal=1;
handles.select_resolution=0;
end
% handles.scal=str2num(BIKI)
guidata(hObject, handles);
otherwise
disp('Unknown method.')
end
guidata(hObject, handles)
% --- Executes during object creation, after setting all properties.
function Status_check_CreateFcn(hObject, eventdata, handles)
% hObject handle to Status_check (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles empty - handles not created until after all CreateFcns called
% --- Executes on button press in radiobutton14.
function radiobutton14_Callback(hObject, eventdata, handles)
% hObject handle to radiobutton14 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% Hint: get(hObject,'Value') returns toggle state of radiobutton14
% --- Executes on button press in radiobutton13.
function radiobutton13_Callback(hObject, eventdata, handles)
% hObject handle to radiobutton13 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% Hint: get(hObject,'Value') returns toggle state of radiobutton13
% --- Executes during object creation, after setting all properties.
function txt_ref_CreateFcn(hObject, eventdata, handles)
% hObject handle to txt_ref (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles empty - handles not created until after all CreateFcns called
% --- Executes during object creation, after setting all properties.
function text21_CreateFcn(hObject, eventdata, handles)
% hObject handle to text21 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles empty - handles not created until after all CreateFcns called
% --- Executes during object creation, after setting all properties.
function axes6_CreateFcn(hObject, eventdata, handles)
% hObject handle to axes6 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles empty - handles not created until after all CreateFcns called
% Hint: place code in OpeningFcn to populate axes6
% --- Executes during object creation, after setting all properties.
function axes7_CreateFcn(hObject, eventdata, handles)
% hObject handle to axes7 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles empty - handles not created until after all CreateFcns called
% Hint: place code in OpeningFcn to populate axes7
% --- Executes during object creation, after setting all properties.
function axes8_CreateFcn(hObject, eventdata, handles)
% hObject handle to axes8 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles empty - handles not created until after all CreateFcns called
% Hint: place code in OpeningFcn to populate axes8

150
src/dic/DIC_Data_check_Beginner3.m Normal file
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function [M, A]=DIC_Data_check_Beginner3(im1, im2, windowsize_x, windowsize_y, overlap, iu_max, iv_max, inum1, FileNames,IM,Hpath, method, pix_mic, cordinates,IM1)
flg1= 0;
i_recur = 0;
if pix_mic==0
inum =inum1;
else
inum =inum1*1e-6;
end
if (any( size(im1)~=size(im2)) )
gui_DIC_sizeCheck1('Title','ERROR');
flg1=1;
end
if overlap > 0.9
gui_DIC_overlapCheck('Title','ERROR');
flg1=1;
end
if (flg1==0)
switch method
case 'method_1'
[xi,yi,iu,iv,da]=DIC_mqd5s( im1', im2', windowsize_x, windowsize_y, ...
overlap, overlap, iu_max, iv_max, i_recur);
[iu_ft, iv_ft, iu_ip, iv_ip] = DIC_filter2(iu, iv, 2, 1.5, 2, 0 );
[iu_s, iv_s] = DIC_smooth(iu_ip, iv_ip, 2);
iu_s(isnan(iu_s))=0; iv_s(isnan(iv_s))=0;
iu_s = iu_s*inum; iv_s = iv_s*inum; % xi = xi*inum; yi = yi*inum;
[x11 y11]= meshgrid(min(xi):max(xi),min(yi):max(yi));
[a, b]=meshgrid(yi,xi);
F = TriScatteredInterp(b(:),a(:),iu_s(:),'natural');
U_inp = F(x11,y11);
F = TriScatteredInterp(b(:),a(:),iv_s(:),'natural');
V_inp = F(x11,y11);
M =[mean(iu_s(:)) mean(iv_s(:)) ...
min(iu_s(:)) max(iu_s(:)) min(iv_s(:)) max(iv_s(:))...
std2(iu_s) std2(iv_s)];
A.iu_s =iu_s;
A.iv_s =iv_s;
A.U_inp =U_inp;
A.V_inp =V_inp;
A.xi = xi;
A.yi = yi;
case 'method_2'
iu_max=windowsize_x; iv_max=windowsize_y;
[xi,yi,iu,iv]=DIC_cor5( im1', im2', windowsize_x, windowsize_y, ...
overlap, overlap, iu_max, iv_max, i_recur);
iu(1,:)=nan; iu(end,:)=nan;iu(:,1)=nan; iu(:,end)=nan;
iv(1,:)=nan; iv(end,:)=nan;iv(:,1)=nan; iv(:,end)=nan;
[iu_ft, iv_ft, iu_ip, iv_ip] = DIC_filter2(iu, iv, 2, 2.0, 2, 0 );
[iu_s, iv_s] = DIC_smooth(iu_ip, iv_ip, 2);
iv_s=-iv_s;
iu_s(isnan(iu_s))=0; iv_s(isnan(iv_s))=0;
iu_s = iu_s*inum; iv_s = iv_s*inum; % xi = xi*inum; yi = yi*inum;
[x11 y11]= meshgrid(min(xi):max(xi),min(yi):max(yi));
[a, b]=meshgrid(yi,xi);
F = TriScatteredInterp(b(:),a(:),iu_s(:),'natural');
U_inp = F(x11,y11);
F = TriScatteredInterp(b(:),a(:),iv_s(:),'natural');
V_inp = F(x11,y11);
% M =[mean(iu_s(:)) mean(iv_s(:)) std2(iu_s) std2(iv_s)];
M =[mean(iu_s(:)) mean(iv_s(:)) ...
min(iu_s(:)) max(iu_s(:)) min(iv_s(:)) max(iv_s(:))...
std2(iu_s) std2(iv_s)];
A.iu_s =iu_s;
A.iv_s =iv_s;
A.U_inp =U_inp;
A.V_inp =V_inp;
A.xi = xi;
A.yi = yi;
end
[xx, yy]= meshgrid(xi,yi);
fig122=figure; set(fig122, 'Visible', 'off');
imshow(IM*0.5),colormap(gray),hold on,
quiver (xx,yy, iu_s',-iv_s','g'), axis equal;
T=strcat('Vector Field--', FileNames);
title(T);
TT= strcat(Hpath,'\',T);
saveas(gcf, TT);
close(fig122)
if pix_mic==0, titl='[Pixel]';
else titl='[m]';
end
%%% if ~max((U_inp(:)))==0; ttm=max(abs(U_inp(:)));else ttm=1e-4; end
ttm= max(U_inp(:));
fig126=figure; set(fig126, 'Visible', 'off');
imagesc(U_inp,[min(U_inp(:)), ttm]),
colormap(jet), hcb=colorbar;title(hcb,titl),
axis image %Tt=strcat('U--', FileNames); title(Tt);
Tt=strcat('Displacement along X, File-', FileNames); title(Tt); xlabel('X-direction (pixels)'), ylabel('Y-direction (pixels)')
saveas(gcf, strcat(Hpath,'\',Tt))
close(fig126)
image_background2(IM1 , xi,yi,U_inp,cordinates,titl, Tt,Hpath);
%%% if ~max(V_inp(:))==0; ttm=max(abs(V_inp(:)));else ttm=1e-4; end
ttm=max(V_inp(:));
fig125=figure; set(fig125, 'Visible', 'off');
imagesc(V_inp,[min(V_inp(:)), ttm]);
colormap(jet), hcb=colorbar;title(hcb,titl);
axis image %Tt=strcat('U--', FileNames); title(Tt);
Tt=strcat('Displacement along Y, File-', FileNames); title(Tt); xlabel('X-direction (pixels)'), ylabel('Y-direction (pixels)')
saveas(gcf, strcat(Hpath,'\',Tt))
close(fig125)
image_background2(IM1 , xi,yi,V_inp,cordinates,titl, Tt, Hpath);
Tt=strcat('Displacement Magnitude, File-', FileNames);
image_background2(IM1 , xi,yi,sqrt(U_inp.^2+V_inp.^2),cordinates,titl, Tt, Hpath);
end

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src/dic/DIC_Linear_Interp_vector3.m Normal file
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function[ u_inp1 ] = DIC_Linear_Interp_vector3( ui )
%========================================================================
tmp=ui;
[row,col]=find(isnan(ui(2:end-1,2:end-1))); row=row+1; col=col+1;
try
for ii=1:numel(col)
ro=row(ii);cl=col(ii);
% tmp(ro,cl)= (ui(ro-1,cl)+ui(ro+1,cl)+ui(ro,cl-1)+ui(ro,cl+1))/4;
tmp11=[ui(ro-1,cl) ui(ro+1,cl) ui(ro,cl-1) ui(ro,cl+1)];
chk_nan= ~isnan(tmp11);
tmp11(isnan(tmp11))=0;
tmp(ro,cl)= sum(tmp11.*chk_nan)/ sum(chk_nan(:));
end
catch
end
[row,col]=find(isnan(ui(2:end-1,1))); row=row+1;
try
for ii=1:numel(col)
ro=row(ii);cl=col(ii);
if ~isnan(ui(ro,2))
tmp(ro,1)= ui(ro,2);
else tmp(ro,1)= tmp(ro,2);
end
end
catch
end
[row,col]=find(isnan(ui(2:end-1,end))); row=row+1;
try
for ii=1:numel(col)
ro=row(ii);cl=col(ii);
if ~isnan(ui(ro,end-1))
tmp(ro,end)= ui(ro,end-1);
else
tmp(ro,end)= tmp(ro,end-1);
end
end
catch
end
[row,col]=find(isnan(ui(end,2:end-1))); col=col+1;
try
for ii=1:numel(row)
cl=col(ii);
if ~isnan(ui(end-1,cl))
tmp(end,cl)= ui(end-1,cl);
else
tmp(end,cl)= tmp(end-1,cl);
end
end
catch
end
[row,col]=find(isnan(ui(1,2:end-1))); col=col+1;
try
for ii=1:numel(row)
ro=row(ii);cl=col(ii);
if ~isnan(ui(2,cl))
tmp(1,cl)= ui(2,cl);
else
tmp(1,cl)= tmp(2,cl);
end
end
catch
end
if isnan(ui(1,1)), tmp(1,1)=tmp(2,2);end
if isnan(ui(end,end)), tmp(end,end)=tmp(end-1,end-1);end
if isnan(ui(1,end)), tmp(1,end)=tmp(2,end-1);end
if isnan(ui(end,1)), tmp(end,1)=tmp(end-1,2);end
u_inp1=tmp;

25
src/dic/DIC_check_vector.m Normal file
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function[ iu_f, iv_f, i_cond ] = DIC_check_vector( iu, iv, vec_std, i_filter )
%========================================================================
%%========================================================================
mx = size(iu,1);
my = size(iu,2);
if i_filter == 2
[ iu_f, i_cond ] = DIC_vector_filter_median2( iu, vec_std );
[ iv_f, i_cond ] = DIC_vector_filter_median2( iv, vec_std );
iu_f = iu_f - iv_f*0;
iv_f = iv_f - iu_f*0;
else
iu_f=iu;
iv_f=iv;
end

90
src/dic/DIC_cor5.m Normal file
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function [xi, yi, iu, iv] = DIC_cor5( im1, im2, ...
nx_pixel, ny_pixel, ...
overlap_x, overlap_y, ...
iu_max, iv_max, ...
i_mode )
%========================================================================
%======================================================================
% set area of search
p_search = 1/3; % percentage of subwindow
nx = size(im1,1);
ny = size(im1,2);
pixel_twx = ceil(p_search*nx_pixel);
pixel_twy = ceil(p_search*ny_pixel);
% (dx_center and dy_center)
[ xi, yi, nx_start, ny_start, nx_overlap, ny_overlap, dx_center, dy_center ] ...
= diccwindowsize32( 'mqd', ...
nx, ny, nx_pixel, ny_pixel, overlap_x, overlap_y );
% total number of vectors
mx = max(size(xi));
my = max(size(yi));
if rem(ny_pixel,2)==0, tem=ny_pixel;
else tem=ceil((ny_pixel+ny_pixel-1)/2); end
for iy = 1: my
c_proc = strcat( 'process accomplished : ', ...
num2str( 100*(iy-1)/(my-1),' %03.0f' ), '/100' );
disp( c_proc )
for ix = 1: mx
ix1 = xi(ix) - dx_center;
ix2 = ix1 + nx_pixel - 1;
iy1 = yi(iy) - dy_center;
iy2 = iy1 + ny_pixel - 1;
wn=nx_pixel/4;
ix11 = xi(ix) - dx_center -wn; if(ix11<1), ix11=1; end
ix22 = ix1 + nx_pixel - 1+ wn; if(ix22>size(im2,1)), ix22=size(im2,1); end
iy11 = yi(iy) - dy_center -wn; if(iy11<1), iy11=1; end
iy22 = iy1 + ny_pixel - 1 + wn; if(iy22>size(im2,2)), iy22=size(im2,2);end
f1 = im1( ix1:ix2, iy1:iy2 );
f2 = im2( ix11:ix22, iy11:iy22 );
C3=dic_xcor_m_mex(f1, f2);
[ ip_x3, ip_y3, MMR] = findpeak32_mex( C3, 1);
SNR = 3.00;
PPR = 1.10;
tx = round(size(C3,1)/2);
ix_peak = -( ip_y3-tx);
iy_peak = ( ip_x3-tx);
%
% --- eliminate odd displacement
%
if (iu_max == 0) & (iv_max == 0)
u_max_dipl = p_search*nx_pixel;
v_max_dipl = p_search*ny_pixel;
else
u_max_dipl = iu_max;
v_max_dipl = iv_max;
end
if ( abs(ix_peak) > u_max_dipl ) | ( abs(iy_peak) > v_max_dipl )
ix_peak = NaN;
iy_peak = NaN;
end
is_x(ix,iy) = ix_peak;
is_y(ix,iy) = iy_peak;
end
end
iu = -is_x;
iv = is_y;

28
src/dic/DIC_filter2.m Normal file
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function [iu_ft,iv_ft,iu_ip,iv_ip]=DIC_filter2( iu,iv, ...
i_filter, vec_std,...
i_interp, i_plot)
%========================================================================
%%========================================================================
%
% Local fitering to smooth
%
if i_filter ~= 0
[ iu_ft, iv_ft, i_cond ] = DIC_check_vector( iu, iv, vec_std, i_filter );
end
if i_interp ~= 0
[ iu_ip ] = DIC_interp_vector( iu_ft, i_interp );
[ iv_ip ] = DIC_interp_vector( iv_ft, i_interp );
else
iu_ip = iu_ft;
iv_ip = iv_ft;
end

11
src/dic/DIC_interp_vector.m Normal file
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function[ uo ] = DIC_interp_vector( ui, ii )
%========================================================================
uo = ui;
% interpolation
[ uo ] = DIC_spline_Interp_vector2( ui );

96
src/dic/DIC_mqd5s.m Normal file
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function [xi, yi, iu, iv, D] = DIC_mqd5s( im1, im2, ...
windo_x, windo_y, ...
X_overlap, Y_overlap, ...
u_max, v_max, ...
i_mode )
%========================================================================
%%
% set filter to eliminate stray vectors: 1-std, 2-median
i_filter = 2;
% Set threshold value (times of standard deviation)
% Vectors will be eliminated if exceeded
vec_std = 1.5;
% set interpolation of missing vector : 1-linear, 2-spline, 3-kriging
i_interp = 2;
% SNR: signal to noise ratio to find peak
r_SNR = 3.0;
% r_peak: ratio of maximum and mean
r_MMR = 1.10;
% r_peak: ratio of 1st peak and 2nd peak
r_PPR = 1.1;
% set area of search
p_search = 1/2; % percentage of subwindow
% min and max values for MQD
d_min = 10^(-5);
d_max = Inf;
%========================================================================
% --- initialization
%
im1 = double(im1);
im2 = double(im2);
nx = size(im1,1);
ny = size(im1,2);
% Get the seacrh area
if ( u_max <= 0 ) | ( v_max <= 0 )
x_maxDis = ceil( p_search*windo_x );
y_maxDis = ceil( p_search*windo_y );
else
x_maxDis = floor( u_max );
y_maxDis = floor( v_max );
if x_maxDis >= windo_x
x_maxDis = windo_x;
end
if y_maxDis >= windo_y
y_maxDis = windo_y;
end
end
X_search = 2*x_maxDis + 1;
Y_search = 2*y_maxDis + 1;
% to obtain the center locations of all the subwindows
% (dx_center and dy_center)
[ xi, yi, nx_start, ny_start, nx_overlap, ny_overlap, dx_center, dy_center ] ...
= diccwindowsize2( 'mqd', nx, ny, windo_x, windo_y, X_overlap, Y_overlap );
dx_center
dy_center
bx=xi-dx_center+windo_x/2;
by=yi-dy_center+windo_y/2;
% number of vectors in x and y
mx = max(size(xi));
my = max(size(yi));
[xi,yi,iu,iv]=DIC_cor5( im1, im2, ...
windo_x, windo_y, ...
X_overlap, Y_overlap, ...
u_max, v_max, ...
i_mode )
D=[];

9
src/dic/DIC_smooth.m Normal file
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function [iu_s,iv_s] = DIC_smooth( iu, iv, i_plot)
%========================================================================
%
%========================================================================
iu_s = DIC_smooth_data(iu);
iv_s = DIC_smooth_data(iv);
i_plot =i_plot *1;

8
src/dic/DIC_smooth_data.m Normal file
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function [y] = DIC_smooth_data(f)
%========================================================================
%%========================================================================
H= [1 2 1; 2 4 2; 1 2 1];
H= H / sum(H(:));
y=imfilter(f,H,'replicate');

19
src/dic/DIC_spline_Interp_vector2.m Normal file
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function[ tmp1] = DIC_spline_Interp_vector2( ui )
%========================================================================
%========================================================================
[ u_inp1 ] = DIC_Linear_Interp_vector3( ui );
tmp=u_inp1;
[row,col]=find(isnan(ui)); %row=row1+2; col=col1+2;
[X, Y]= meshgrid(1:size(tmp,2),1:size(tmp,1));
Vq = interp2(X,Y,tmp,row,col);
tmp1=tmp;
for ii=1:numel(row)
tmp1(row(ii),col(ii))=Vq(ii);
end
if any(isnan(tmp1)), tmp1=u_inp1; end

38
src/dic/DIC_vector_filter_median2.m Normal file
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function[ uo, ii ] = DIC_vector_filter_median2( ui, vec_std )
%========================================================================
dia=4;
err_int = 0.25;
u_new=zeros(size(ui,1)+dia, size(ui,2)+dia)+nan;
u_new(3:end-2, 3:end-2)=ui;
uo= zeros(size(ui));
[row, col]=size(ui);
ii=0;
for ri=1:row
for ci=1:col
tmp1 = u_new(ri:ri+4, ci:ci+4);
tmp = find(~isnan(tmp1));
f = tmp1(tmp);
[f_mean f_std f_med] = dic_filterHist3(f);
if abs( ui(ri,ci) - f_med ) > (max(err_int, vec_std*f_std))
uo(ri,ci)=nan; ii=1;
else
uo(ri,ci)=ui(ri,ci);
end
end
end

14
src/dic/cordinate_filter.m Normal file
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function yD = cordinate_filter(yD1, s)
%#codegen
if ~isempty(yD1)
yD= round(yD1);
else
yD=[];
end

11
src/dic/dic_filterHist3.m Normal file
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function[ u_mean, u_std, u_med] = dic_filterHist3( u )
limt = 2.0;
f = u(~isnan(u));
tm= f.*(abs(f-mean(f))<(limt*std(f)));
tm=tm(find(tm));
u_mean=mean(tm);
u_std= std(tm);
u_med= median(tm);

217
src/dic/dic_xcor_m.m Normal file
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function C = dic_xcor_m(varargin)
%#codegen
[T, A] = ParseInputs(varargin{:});
% Haralick and Shapiro, Volume II (p. 317),
% "Fast Normalized Cross-Correlation", by J. P. Lewis, Industrial Light & Magic.
%
xcorr_TA = xcorr2_fast(T,A);
[m, n] = size(T);
mn = m*n;
local_sum_A = local_sum(A,m,n);
local_sum_A2 = local_sum(A.*A,m,n);
% Note: diff_local_sums should be nonnegative, but may have negative
% values due to round off errors. Below, we use max to ensure the
% radicand is nonnegative.
diff_local_sums = ( local_sum_A2 - (local_sum_A.^2)/mn );
denom_A = sqrt( max(diff_local_sums,0) );
denom_T = sqrt(mn-1)*std(T(:));
denom = denom_T*denom_A;
numerator = (xcorr_TA - local_sum_A*sum(T(:))/mn );
% We know denom_T~=0 from input parsing;
% so denom is only zero where denom_A is zero, and in
% these locations, C is also zero.
C = zeros(size(numerator));
tol = sqrt( eps( max(abs(denom(:)))) );
i_nonzero = find(denom > tol);
C(i_nonzero) = numerator(i_nonzero) ./ denom(i_nonzero);
% Another numerics backstop. If any of the coefficients are outside the
% range [-1 1], the numerics are unstable to small variance in A or T. In
% these cases, set C to zero to reflect undefined 0/0 condition.
C( ( abs(C) - 1 ) > sqrt(eps(1)) ) = 0;
%-------------------------------
% Function local_sum
%
function local_sum_A = local_sum(A,m,n)
% We thank Eli Horn for providing this code, used with his permission,
% to speed up the calculation of local sums. The algorithm depends on
% precomputing running sums as described in "Fast Normalized
% Cross-Correlation", by J. P. Lewis, Industrial Light & Magic.
B = padarray(A,[m n]);
s = cumsum(B,1);
c = s(1+m:end-1,:)-s(1:end-m-1,:);
s = cumsum(c,2);
local_sum_A = s(:,1+n:end-1)-s(:,1:end-n-1);
%-------------------------------
% Function xcorr2_fast
%
function cross_corr = xcorr2_fast(T,A)
T_size = size(T);
A_size = size(A);
outsize = A_size + T_size - 1;
% figure out when to use spatial domain vs. freq domain
conv_time = time_conv2(T_size,A_size); % 1 conv2
fft_time = 1*time_fft2(outsize); % 2 fft2 + 1 ifft2
cross_corr = conv2(rot90(T,2),A);
%-------------------------------
% Function freqxcorr
%
function xcorr_ab = freqxcorr(a,b,outsize)
% calculate correlation in frequency domain
Fa = fft2(rot90(a,2),outsize(1),outsize(2));
Fb = fft2(b,outsize(1),outsize(2));
% xcorr_ab = ifft2(Fa .* Fb,'symmetric');
xcorr_ab = real(ifft2(Fa .* Fb));
%-------------------------------
% Function time_conv2
%
function time = time_conv2(obssize,refsize)
% time a spatial domain convolution for 10-by-10 x 20-by-20 matrices
% a = ones(10);
% b = ones(20);
% mintime = 0.1;
% t1 = cputime;
% t2 = t1;
% k = 0;
% while (t2-t1)<mintime
% c = conv2(a,b);
% k = k + 1;
% t2 = cputime;
% end
% t_total = (t2-t1)/k;
% % convolution time = K*prod(size(a))*prod(size(b))
% % t_total = K*10*10*20*20 = 40000*K
% K = t_total/40000;
% K was empirically calculated by the commented-out code above.
K = 2.7e-8;
% convolution time = K*prod(obssize)*prod(refsize)
time = K*prod(obssize)*prod(refsize);
%-------------------------------
% Function time_fft2
%
function time = time_fft2(outsize)
% time a frequency domain convolution by timing two one-dimensional ffts
R = outsize(1);
S = outsize(2);
% Tr = time_fft(R);
% K_fft = Tr/(R*log(R));
% K_fft was empirically calculated by the 2 commented-out lines above.
K_fft = 3.3e-7;
Tr = K_fft*R*log(R);
if S==R
Ts = Tr;
else
% Ts = time_fft(S); % uncomment to estimate explicitly
Ts = K_fft*S*log(S);
end
time = S*Tr + R*Ts;
% %-------------------------------
% % Function time_fft
% %
% function T = time_fft(M)
% % time a complex fft that is M elements long
% vec = complex(ones(M,1),ones(M,1));
% mintime = 0.1;
% t1 = cputime;
% t2 = t1;
% k = 0;
% while (t2-t1) < mintime
% dummy = fft(vec);
% k = k + 1;
% t2 = cputime;
% end
% T = (t2-t1)/k;
%-----------------------------------------------------------------------------
function [T, A] = ParseInputs(varargin)
narginchk(2,2)
T = varargin{1};
A = varargin{2};
validateattributes(T,{'logical','numeric'},{'real','nonsparse','2d','finite'},mfilename,'T',1)
validateattributes(A,{'logical','numeric'},{'real','nonsparse','2d','finite'},mfilename,'A',2)
checkSizesTandA(T,A)
% See geck 342320. If either A or T has a minimum value which is negative, we
% need to shift the array so all values are positive to ensure numerically
% robust results for the normalized cross-correlation.
A = shiftData(A);
T = shiftData(T);
checkIfFlat(T);
%-----------------------------------------------------------------------------
function B = shiftData(A)
B = double(A);
is_unsigned = isa(A,'uint8') || isa(A,'uint16') || isa(A,'uint32');
if ~is_unsigned
min_B = min(B(:));
if min_B < 0
B = B - min_B;
end
end
%-----------------------------------------------------------------------------
function checkSizesTandA(T,A)
if numel(T) < 2
% error(message('images:xcorr2_norm:invalidTemplate'))
end
if size(A,1)<size(T,1) || size(A,2)<size(T,2)
% error(message('images:xcorr2_norm:invalidSizeForA'))
end
%-----------------------------------------------------------------------------
function checkIfFlat(T)
if std(T(:)) == 0
% error(message('images:xcorr2_norm:sameElementsInTemplate'))
end

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function [ xi, yi, nx_start, ny_start, nx_overlap, ny_overlap, dxcenter, dycenter ] ...
= diccwindowsize32( type, ...
nx, ny, nx_pixel, ny_pixel, ...
overlap_x, overlap_y )
%========================================================================
% BJM
%Created 4-02-2013
%Modified: 6-02-2013, 10-04-2014 1-11-2017
%========================================================================
bordr = 1/4;
if type == 'mqd'
nx_start = nx_pixel*bordr;
ny_start = ny_pixel*bordr;
else
nx_start = 1;
ny_start = 1;
end
if mod(nx_pixel, 2) == 0
dxc = nx_pixel/2 + 0.5;
else
dxc = nx_pixel/2;
end
if mod(ny_pixel, 2) == 0
dyc = ny_pixel/2 + 0.5;
else
dyc = ny_pixel/2;
end
% number of vectors
dycenter=ny_pixel/2+0.5;
dxcenter=nx_pixel/2+0.5;
xi=(floor(nx_pixel/2+nx_pixel*bordr)+0.5: ceil((1-overlap_x)*nx_pixel):(nx-ceil(nx_pixel/2+nx_pixel*bordr)+1));
yi=(floor(ny_pixel/2+ny_pixel*bordr)+0.5: ceil((1-overlap_y)*ny_pixel):(ny-ceil(ny_pixel/2+ny_pixel*bordr)+1));
nx_overlap = floor( nx_pixel*overlap_x );
ny_overlap = floor( ny_pixel*overlap_y );

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function [xpeak, ypeak, max_f] = findpeak32(f,subpixel)
[max_f, imax] = max(abs(f(:)));
[ypeak, xpeak] = ind2sub(size(f),imax(1));
end

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function freezeColors(varargin)
% freezeColors Lock colors of plot, enabling multiple colormaps per figure. (v2.3)
%
% Problem: There is only one colormap per figure. This function provides
% an easy solution when plots using different colomaps are desired
% in the same figure.
%
% freezeColors freezes the colors of graphics objects in the current axis so
% that subsequent changes to the colormap (or caxis) will not change the
% colors of these objects. freezeColors works on any graphics object
% with CData in indexed-color mode: surfaces, images, scattergroups,
% bargroups, patches, etc. It works by converting CData to true-color rgb
% based on the colormap active at the time freezeColors is called.
%
% The original indexed color data is saved, and can be restored using
% unfreezeColors, making the plot once again subject to the colormap and
% caxis.
%
%
% Usage:
% freezeColors applies to all objects in current axis (gca),
% freezeColors(axh) same, but works on axis axh.
%
% Example:
% subplot(2,1,1); imagesc(X); colormap hot; freezeColors
% subplot(2,1,2); imagesc(Y); colormap hsv; freezeColors etc...
%
% Note: colorbars must also be frozen. Due to Matlab 'improvements' this can
% no longer be done with freezeColors. Instead, please
% use the function CBFREEZE by Carlos Adrian Vargas Aguilera
% that can be downloaded from the MATLAB File Exchange
% (http://www.mathworks.com/matlabcentral/fileexchange/24371)
%
% h=colorbar; cbfreeze(h), or simply cbfreeze(colorbar)
%
% For additional examples, see test/test_main.m
%
% Side effect on render mode: freezeColors does not work with the painters
% renderer, because Matlab doesn't support rgb color data in
% painters mode. If the current renderer is painters, freezeColors
% changes it to zbuffer. This may have unexpected effects on other aspects
% of your plots.
%
% See also unfreezeColors, freezeColors_pub.html, cbfreeze.
%
%
% John Iversen (iversen@nsi.edu) 3/23/05
%
% Changes:
% JRI (iversen@nsi.edu) 4/19/06 Correctly handles scaled integer cdata
% JRI 9/1/06 should now handle all objects with cdata: images, surfaces,
% scatterplots. (v 2.1)
% JRI 11/11/06 Preserves NaN colors. Hidden option (v 2.2, not uploaded)
% JRI 3/17/07 Preserve caxis after freezing--maintains colorbar scale (v 2.3)
% JRI 4/12/07 Check for painters mode as Matlab doesn't support rgb in it.
% JRI 4/9/08 Fix preserving caxis for objects within hggroups (e.g. contourf)
% JRI 4/7/10 Change documentation for colorbars
% Hidden option for NaN colors:
% Missing data are often represented by NaN in the indexed color
% data, which renders transparently. This transparency will be preserved
% when freezing colors. If instead you wish such gaps to be filled with
% a real color, add 'nancolor',[r g b] to the end of the arguments. E.g.
% freezeColors('nancolor',[r g b]) or freezeColors(axh,'nancolor',[r g b]),
% where [r g b] is a color vector. This works on images & pcolor, but not on
% surfaces.
% Thanks to Fabiano Busdraghi and Jody Klymak for the suggestions. Bugfixes
% attributed in the code.
% Free for all uses, but please retain the following:
% Original Author:
% John Iversen, 2005-10
% john_iversen@post.harvard.edu
appdatacode = 'JRI__freezeColorsData';
[h, nancolor] = checkArgs(varargin);
%gather all children with scaled or indexed CData
cdatah = getCDataHandles(h);
%current colormap
cmap = colormap;
nColors = size(cmap,1);
cax = caxis;
% convert object color indexes into colormap to true-color data using
% current colormap
for hh = cdatah',
g = get(hh);
%preserve parent axis clim
parentAx = getParentAxes(hh);
originalClim = get(parentAx, 'clim');
% Note: Special handling of patches: For some reason, setting
% cdata on patches created by bar() yields an error,
% so instead we'll set facevertexcdata instead for patches.
if ~strcmp(g.Type,'patch'),
cdata = g.CData;
else
cdata = g.FaceVertexCData;
end
%get cdata mapping (most objects (except scattergroup) have it)
if isfield(g,'CDataMapping'),
scalemode = g.CDataMapping;
else
scalemode = 'scaled';
end
%save original indexed data for use with unfreezeColors
siz = size(cdata);
setappdata(hh, appdatacode, {cdata scalemode});
%convert cdata to indexes into colormap
if strcmp(scalemode,'scaled'),
%4/19/06 JRI, Accommodate scaled display of integer cdata:
% in MATLAB, uint * double = uint, so must coerce cdata to double
% Thanks to O Yamashita for pointing this need out
idx = ceil( (double(cdata) - cax(1)) / (cax(2)-cax(1)) * nColors);
else %direct mapping
idx = cdata;
%10/8/09 in case direct data is non-int (e.g. image;freezeColors)
% (Floor mimics how matlab converts data into colormap index.)
% Thanks to D Armyr for the catch
idx = floor(idx);
end
%clamp to [1, nColors]
idx(idx<1) = 1;
idx(idx>nColors) = nColors;
%handle nans in idx
nanmask = isnan(idx);
idx(nanmask)=1; %temporarily replace w/ a valid colormap index
%make true-color data--using current colormap
realcolor = zeros(siz);
for i = 1:3,
c = cmap(idx,i);
c = reshape(c,siz);
c(nanmask) = nancolor(i); %restore Nan (or nancolor if specified)
realcolor(:,:,i) = c;
end
%apply new true-color color data
%true-color is not supported in painters renderer, so switch out of that
if strcmp(get(gcf,'renderer'), 'painters'),
set(gcf,'renderer','opengl');
end
%replace original CData with true-color data
if ~strcmp(g.Type,'patch'),
set(hh,'CData',realcolor);
else
set(hh,'faceVertexCData',permute(realcolor,[1 3 2]))
end
%restore clim (so colorbar will show correct limits)
if ~isempty(parentAx),
set(parentAx,'clim',originalClim)
end
end %loop on indexed-color objects
% ============================================================================ %
% Local functions
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%% getCDataHandles -- get handles of all descendents with indexed CData
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
function hout = getCDataHandles(h)
% getCDataHandles Find all objects with indexed CData
%recursively descend object tree, finding objects with indexed CData
% An exception: don't include children of objects that themselves have CData:
% for example, scattergroups are non-standard hggroups, with CData. Changing
% such a group's CData automatically changes the CData of its children,
% (as well as the children's handles), so there's no need to act on them.
error(nargchk(1,1,nargin,'struct'))
hout = [];
if isempty(h),return;end
ch = get(h,'children');
for hh = ch'
g = get(hh);
if isfield(g,'CData'), %does object have CData?
%is it indexed/scaled?
if ~isempty(g.CData) && isnumeric(g.CData) && size(g.CData,3)==1,
hout = [hout; hh]; %#ok<AGROW> %yes, add to list
end
else %no CData, see if object has any interesting children
hout = [hout; getCDataHandles(hh)]; %#ok<AGROW>
end
end
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%% getParentAxes -- return handle of axes object to which a given object belongs
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
function hAx = getParentAxes(h)
% getParentAxes Return enclosing axes of a given object (could be self)
error(nargchk(1,1,nargin,'struct'))
%object itself may be an axis
if strcmp(get(h,'type'),'axes'),
hAx = h;
return
end
parent = get(h,'parent');
if (strcmp(get(parent,'type'), 'axes')),
hAx = parent;
else
hAx = getParentAxes(parent);
end
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%% checkArgs -- Validate input arguments
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
function [h, nancolor] = checkArgs(args)
% checkArgs Validate input arguments to freezeColors
nargs = length(args);
error(nargchk(0,3,nargs,'struct'))
%grab handle from first argument if we have an odd number of arguments
if mod(nargs,2),
h = args{1};
if ~ishandle(h),
error('JRI:freezeColors:checkArgs:invalidHandle',...
'The first argument must be a valid graphics handle (to an axis)')
end
% 4/2010 check if object to be frozen is a colorbar
if strcmp(get(h,'Tag'),'Colorbar'),
if ~exist('cbfreeze.m'),
warning('JRI:freezeColors:checkArgs:cannotFreezeColorbar',...
['You seem to be attempting to freeze a colorbar. This no longer'...
'works. Please read the help for freezeColors for the solution.'])
else
cbfreeze(h);
return
end
end
args{1} = [];
nargs = nargs-1;
else
h = gca;
end
%set nancolor if that option was specified
nancolor = [nan nan nan];
if nargs == 2,
if strcmpi(args{end-1},'nancolor'),
nancolor = args{end};
if ~all(size(nancolor)==[1 3]),
error('JRI:freezeColors:checkArgs:badColorArgument',...
'nancolor must be [r g b] vector');
end
nancolor(nancolor>1) = 1; nancolor(nancolor<0) = 0;
else
error('JRI:freezeColors:checkArgs:unrecognizedOption',...
'Unrecognized option (%s). Only ''nancolor'' is valid.',args{end-1})
end
end

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function varargout = gui_DIC_overlapCheck(varargin)
% GUI_DIC_OVERLAPCHECK MATLAB code for gui_DIC_overlapCheck.fig
% GUI_DIC_OVERLAPCHECK, by itself, creates a new GUI_DIC_OVERLAPCHECK or raises the existing
% singleton*.
%
% H = GUI_DIC_OVERLAPCHECK returns the handle to a new GUI_DIC_OVERLAPCHECK or the handle to
% the existing singleton*.
%
% GUI_DIC_OVERLAPCHECK('CALLBACK',hObject,eventData,handles,...) calls the local
% function named CALLBACK in GUI_DIC_OVERLAPCHECK.M with the given input arguments.
%
% GUI_DIC_OVERLAPCHECK('Property','Value',...) creates a new GUI_DIC_OVERLAPCHECK or raises the
% existing singleton*. Starting from the left, property value pairs are
% applied to the GUI before gui_DIC_overlapCheck_OpeningFcn gets called. An
% unrecognized property name or invalid value makes property application
% stop. All inputs are passed to gui_DIC_overlapCheck_OpeningFcn via varargin.
%
% *See GUI Options on GUIDE's Tools menu. Choose "GUI allows only one
% instance to run (singleton)".
%
% See also: GUIDE, GUIDATA, GUIHANDLES
% Edit the above text to modify the response to help gui_DIC_overlapCheck
% Last Modified by GUIDE v2.5 27-Dec-2017 13:10:48
% Begin initialization code - DO NOT EDIT
gui_Singleton = 1;
gui_State = struct('gui_Name', mfilename, ...
'gui_Singleton', gui_Singleton, ...
'gui_OpeningFcn', @gui_DIC_overlapCheck_OpeningFcn, ...
'gui_OutputFcn', @gui_DIC_overlapCheck_OutputFcn, ...
'gui_LayoutFcn', [] , ...
'gui_Callback', []);
if nargin && ischar(varargin{1})
gui_State.gui_Callback = str2func(varargin{1});
end
if nargout
[varargout{1:nargout}] = gui_mainfcn(gui_State, varargin{:});
else
gui_mainfcn(gui_State, varargin{:});
end
% End initialization code - DO NOT EDIT
% --- Executes just before gui_DIC_overlapCheck is made visible.
function gui_DIC_overlapCheck_OpeningFcn(hObject, eventdata, handles, varargin)
% This function has no output args, see OutputFcn.
% hObject handle to figure
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% varargin command line arguments to gui_DIC_overlapCheck (see VARARGIN)
% Choose default command line output for gui_DIC_overlapCheck
handles.output = hObject;
% Update handles structure
guidata(hObject, handles);
% UIWAIT makes gui_DIC_overlapCheck wait for user response (see UIRESUME)
% uiwait(handles.figure1);
% --- Outputs from this function are returned to the command line.
function varargout = gui_DIC_overlapCheck_OutputFcn(hObject, eventdata, handles)
% varargout cell array for returning output args (see VARARGOUT);
% hObject handle to figure
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% Get default command line output from handles structure
varargout{1} = handles.output;
% --- Executes on button press in pushbutton1.
function pushbutton1_Callback(hObject, eventdata, handles)
% hObject handle to pushbutton1 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
delete(handles.figure1);

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function varargout = gui_DIC_sizeCheck(varargin)
% GUI_DIC_SIZECHECK MATLAB code for gui_DIC_sizeCheck.fig
% GUI_DIC_SIZECHECK by itself, creates a new GUI_DIC_SIZECHECK or raises the
% existing singleton*.
%
% H = GUI_DIC_SIZECHECK returns the handle to a new GUI_DIC_SIZECHECK or the handle to
% the existing singleton*.
%
% GUI_DIC_SIZECHECK('CALLBACK',hObject,eventData,handles,...) calls the local
% function named CALLBACK in GUI_DIC_SIZECHECK.M with the given input arguments.
%
% GUI_DIC_SIZECHECK('Property','Value',...) creates a new GUI_DIC_SIZECHECK or raises the
% existing singleton*. Starting from the left, property value pairs are
% applied to the GUI before gui_DIC_sizeCheck_OpeningFcn gets called. An
% unrecognized property name or invalid value makes property application
% stop. All inputs are passed to gui_DIC_sizeCheck_OpeningFcn via varargin.
%
% *See GUI Options on GUIDE's Tools menu. Choose "GUI allows only one
% instance to run (singleton)".
%
% See also: GUIDE, GUIDATA, GUIHANDLES
% Edit the above text to modify the response to help gui_DIC_sizeCheck
% Last Modified by GUIDE v2.5 27-Dec-2017 11:33:02
% Begin initialization code - DO NOT EDIT
gui_Singleton = 1;
gui_State = struct('gui_Name', mfilename, ...
'gui_Singleton', gui_Singleton, ...
'gui_OpeningFcn', @gui_DIC_sizeCheck_OpeningFcn, ...
'gui_OutputFcn', @gui_DIC_sizeCheck_OutputFcn, ...
'gui_LayoutFcn', [] , ...
'gui_Callback', []);
if nargin && ischar(varargin{1})
gui_State.gui_Callback = str2func(varargin{1});
end
if nargout
[varargout{1:nargout}] = gui_mainfcn(gui_State, varargin{:});
else
gui_mainfcn(gui_State, varargin{:});
end
% End initialization code - DO NOT EDIT
% --- Executes just before gui_DIC_sizeCheck is made visible.
function gui_DIC_sizeCheck_OpeningFcn(hObject, eventdata, handles, varargin)
% This function has no output args, see OutputFcn.
% hObject handle to figure
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% varargin command line arguments to gui_DIC_sizeCheck (see VARARGIN)
% Choose default command line output for gui_DIC_sizeCheck
handles.output = 'Yes';
% Update handles structure
guidata(hObject, handles);
% Insert custom Title and Text if specified by the user
% Hint: when choosing keywords, be sure they are not easily confused
% with existing figure properties. See the output of set(figure) for
% a list of figure properties.
if(nargin > 3)
for index = 1:2:(nargin-3),
if nargin-3==index, break, end
switch lower(varargin{index})
case 'title'
set(hObject, 'Name', varargin{index+1});
case 'string'
set(handles.text1, 'String', varargin{index+1});
end
end
end
% Determine the position of the dialog - centered on the callback figure
% if available, else, centered on the screen
FigPos=get(0,'DefaultFigurePosition');
OldUnits = get(hObject, 'Units');
set(hObject, 'Units', 'pixels');
OldPos = get(hObject,'Position');
FigWidth = OldPos(3);
FigHeight = OldPos(4);
if isempty(gcbf)
ScreenUnits=get(0,'Units');
set(0,'Units','pixels');
ScreenSize=get(0,'ScreenSize');
set(0,'Units',ScreenUnits);
FigPos(1)=1/2*(ScreenSize(3)-FigWidth);
FigPos(2)=2/3*(ScreenSize(4)-FigHeight);
else
GCBFOldUnits = get(gcbf,'Units');
set(gcbf,'Units','pixels');
GCBFPos = get(gcbf,'Position');
set(gcbf,'Units',GCBFOldUnits);
FigPos(1:2) = [(GCBFPos(1) + GCBFPos(3) / 2) - FigWidth / 2, ...
(GCBFPos(2) + GCBFPos(4) / 2) - FigHeight / 2];
end
FigPos(3:4)=[FigWidth FigHeight];
set(hObject, 'Position', FigPos);
set(hObject, 'Units', OldUnits);
% Show a question icon from dialogicons.mat - variables questIconData
% and questIconMap
load dialogicons.mat
IconData=questIconData;
questIconMap(256,:) = get(handles.figure1, 'Color');
IconCMap=questIconMap;
Img=image(IconData, 'Parent', handles.axes1);
set(handles.figure1, 'Colormap', IconCMap);
set(handles.axes1, ...
'Visible', 'off', ...
'YDir' , 'reverse' , ...
'XLim' , get(Img,'XData'), ...
'YLim' , get(Img,'YData') ...
);
% Make the GUI modal
set(handles.figure1,'WindowStyle','modal')
% UIWAIT makes gui_DIC_sizeCheck wait for user response (see UIRESUME)
uiwait(handles.figure1);
% --- Outputs from this function are returned to the command line.
function varargout = gui_DIC_sizeCheck_OutputFcn(hObject, eventdata, handles)
% varargout cell array for returning output args (see VARARGOUT);
% hObject handle to figure
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% Get default command line output from handles structure
varargout{1} = handles.output;
% The figure can be deleted now
delete(handles.figure1);
% --- Executes on button press in pushbutton1.
function pushbutton1_Callback(hObject, eventdata, handles)
% hObject handle to pushbutton1 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
handles.output = get(hObject,'String');
% Update handles structure
guidata(hObject, handles);
% Use UIRESUME instead of delete because the OutputFcn needs
% to get the updated handles structure.
uiresume(handles.figure1);
% --- Executes on button press in pushbutton2.
function pushbutton2_Callback(hObject, eventdata, handles)
% hObject handle to pushbutton2 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
handles.output = get(hObject,'String');
% Update handles structure
guidata(hObject, handles);
% Use UIRESUME instead of delete because the OutputFcn needs
% to get the updated handles structure.
uiresume(handles.figure1);
% --- Executes when user attempts to close figure1.
function figure1_CloseRequestFcn(hObject, eventdata, handles)
% hObject handle to figure1 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
if isequal(get(hObject, 'waitstatus'), 'waiting')
% The GUI is still in UIWAIT, us UIRESUME
uiresume(hObject);
else
% The GUI is no longer waiting, just close it
delete(hObject);
end
% --- Executes on key press over figure1 with no controls selected.
function figure1_KeyPressFcn(hObject, eventdata, handles)
% hObject handle to figure1 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% Check for "enter" or "escape"
if isequal(get(hObject,'CurrentKey'),'escape')
% User said no by hitting escape
handles.output = 'No';
% Update handles structure
guidata(hObject, handles);
uiresume(handles.figure1);
end
if isequal(get(hObject,'CurrentKey'),'return')
uiresume(handles.figure1);
end

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function varargout = gui_DIC_sizeCheck1(varargin)
% GUI_DIC_SIZECHECK1 MATLAB code for gui_DIC_sizeCheck1.fig
% GUI_DIC_SIZECHECK1, by itself, creates a new GUI_DIC_SIZECHECK1 or raises the existing
% singleton*.
%
% H = GUI_DIC_SIZECHECK1 returns the handle to a new GUI_DIC_SIZECHECK1 or the handle to
% the existing singleton*.
%
% GUI_DIC_SIZECHECK1('CALLBACK',hObject,eventData,handles,...) calls the local
% function named CALLBACK in GUI_DIC_SIZECHECK1.M with the given input arguments.
%
% GUI_DIC_SIZECHECK1('Property','Value',...) creates a new GUI_DIC_SIZECHECK1 or raises the
% existing singleton*. Starting from the left, property value pairs are
% applied to the GUI before gui_DIC_sizeCheck1_OpeningFcn gets called. An
% unrecognized property name or invalid value makes property application
% stop. All inputs are passed to gui_DIC_sizeCheck1_OpeningFcn via varargin.
%
% *See GUI Options on GUIDE's Tools menu. Choose "GUI allows only one
% instance to run (singleton)".
%
% See also: GUIDE, GUIDATA, GUIHANDLES
% Edit the above text to modify the response to help gui_DIC_sizeCheck1
% Last Modified by GUIDE v2.5 27-Dec-2017 12:07:24
% Begin initialization code - DO NOT EDIT
gui_Singleton = 1;
gui_State = struct('gui_Name', mfilename, ...
'gui_Singleton', gui_Singleton, ...
'gui_OpeningFcn', @gui_DIC_sizeCheck1_OpeningFcn, ...
'gui_OutputFcn', @gui_DIC_sizeCheck1_OutputFcn, ...
'gui_LayoutFcn', [] , ...
'gui_Callback', []);
if nargin && ischar(varargin{1})
gui_State.gui_Callback = str2func(varargin{1});
end
if nargout
[varargout{1:nargout}] = gui_mainfcn(gui_State, varargin{:});
else
gui_mainfcn(gui_State, varargin{:});
end
% End initialization code - DO NOT EDIT
% --- Executes just before gui_DIC_sizeCheck1 is made visible.
function gui_DIC_sizeCheck1_OpeningFcn(hObject, eventdata, handles, varargin)
% This function has no output args, see OutputFcn.
% hObject handle to figure
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% varargin command line arguments to gui_DIC_sizeCheck1 (see VARARGIN)
% Choose default command line output for gui_DIC_sizeCheck1
handles.output = hObject;
% Update handles structure
guidata(hObject, handles);
% UIWAIT makes gui_DIC_sizeCheck1 wait for user response (see UIRESUME)
% uiwait(handles.figure1);
% --- Outputs from this function are returned to the command line.
function varargout = gui_DIC_sizeCheck1_OutputFcn(hObject, eventdata, handles)
% varargout cell array for returning output args (see VARARGOUT);
% hObject handle to figure
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% Get default command line output from handles structure
varargout{1} = handles.output;
% --- Executes on button press in pushbutton1.
function pushbutton1_Callback(hObject, eventdata, handles)
% hObject handle to pushbutton1 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
delete(handles.figure1);

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function varargout = gui_Image_Crop_1(varargin)
% GUI_IMAGE_CROP_1 MATLAB code for gui_Image_Crop_1.fig
% GUI_IMAGE_CROP_1 by itself, creates a new GUI_IMAGE_CROP_1 or raises the
% existing singleton*.
%
% H = GUI_IMAGE_CROP_1 returns the handle to a new GUI_IMAGE_CROP_1 or the handle to
% the existing singleton*.
%
% GUI_IMAGE_CROP_1('CALLBACK',hObject,eventData,handles,...) calls the local
% function named CALLBACK in GUI_IMAGE_CROP_1.M with the given input arguments.
%
% GUI_IMAGE_CROP_1('Property','Value',...) creates a new GUI_IMAGE_CROP_1 or raises the
% existing singleton*. Starting from the left, property value pairs are
% applied to the GUI before gui_Image_Crop_1_OpeningFcn gets called. An
% unrecognized property name or invalid value makes property application
% stop. All inputs are passed to gui_Image_Crop_1_OpeningFcn via varargin.
%
% *See GUI Options on GUIDE's Tools menu. Choose "GUI allows only one
% instance to run (singleton)".
%
% See also: GUIDE, GUIDATA, GUIHANDLES
% Edit the above text to modify the response to help gui_Image_Crop_1
% Last Modified by GUIDE v2.5 02-Aug-2018 19:55:47
% Begin initialization code - DO NOT EDIT
gui_Singleton = 1;
gui_State = struct('gui_Name', mfilename, ...
'gui_Singleton', gui_Singleton, ...
'gui_OpeningFcn', @gui_Image_Crop_1_OpeningFcn, ...
'gui_OutputFcn', @gui_Image_Crop_1_OutputFcn, ...
'gui_LayoutFcn', [] , ...
'gui_Callback', []);
if nargin && ischar(varargin{1})
gui_State.gui_Callback = str2func(varargin{1});
end
if nargout
[varargout{1:nargout}] = gui_mainfcn(gui_State, varargin{:});
else
gui_mainfcn(gui_State, varargin{:});
end
% End initialization code - DO NOT EDIT
% --- Executes just before gui_Image_Crop_1 is made visible.
function gui_Image_Crop_1_OpeningFcn(hObject, eventdata, handles, varargin)
% This function has no output args, see OutputFcn.
% hObject handle to figure
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% varargin command line arguments to gui_Image_Crop_1 (see VARARGIN)
% Choose default command line output for gui_Image_Crop_1
handles.output = 'Cancel';
% Update handles structure
guidata(hObject, handles);
% Insert custom Title and Text if specified by the user
% Hint: when choosing keywords, be sure they are not easily confused
% with existing figure properties. See the output of set(figure) for
% a list of figure properties.
if(nargin > 3)
for index = 1:2:(nargin-3),
if nargin-3==index, break, end
switch lower(varargin{index})
case 'title'
set(hObject, 'Name', varargin{index+1});
case 'string'
set(handles.text1, 'String', varargin{index+1});
end
end
end
% Determine the position of the dialog - centered on the callback figure
% if available, else, centered on the screen
FigPos=get(0,'DefaultFigurePosition');
OldUnits = get(hObject, 'Units');
set(hObject, 'Units', 'pixels');
OldPos = get(hObject,'Position');
FigWidth = OldPos(3);
FigHeight = OldPos(4);
if isempty(gcbf)
ScreenUnits=get(0,'Units');
set(0,'Units','pixels');
ScreenSize=get(0,'ScreenSize');
set(0,'Units',ScreenUnits);
FigPos(1)=1/2*(ScreenSize(3)-FigWidth);
FigPos(2)=2/3*(ScreenSize(4)-FigHeight);
else
GCBFOldUnits = get(gcbf,'Units');
set(gcbf,'Units','pixels');
GCBFPos = get(gcbf,'Position');
set(gcbf,'Units',GCBFOldUnits);
FigPos(1:2) = [(GCBFPos(1) + GCBFPos(3) / 2) - FigWidth / 2, ...
(GCBFPos(2) + GCBFPos(4) / 2) - FigHeight / 2];
end
FigPos(3:4)=[FigWidth FigHeight];
set(hObject, 'Position', FigPos);
set(hObject, 'Units', OldUnits);
% Show a question icon from dialogicons.mat - variables questIconData
% and questIconMap
load dialogicons.mat
IconData=questIconData;
questIconMap(256,:) = get(handles.figure1, 'Color');
IconCMap=questIconMap;
% Img=image(IconData, 'Parent', handles.axes1);
% set(handles.figure1, 'Colormap', IconCMap);
% set(handles.axes1, ...
% 'Visible', 'off', ...
% 'YDir' , 'reverse' , ...
% 'XLim' , get(Img,'XData'), ...
% 'YLim' , get(Img,'YData') ...
% );
% Make the GUI modal
set(handles.figure1,'WindowStyle','modal')
handles.image=varargin{1};
axes(handles.axes3);cla;imshow(handles.image,[]);
set(handles.push_CANCEL, 'Enable','off');
set(handles.push_CROP, 'Enable','off');
message = sprintf('Draw a box over the image to select the ROI');
h1=msgbox(message);
handles.h1=h1;
uiwait(h1);
% set(handles.push_CANCEL, 'Enable','on');
handles.LOC =[];
handles.output = 'CANCEL';
guidata(hObject, handles);
axes(handles.axes3);cla;imshow(handles.image,[]);
h = imrect;
% h=0;
if sum(size(h))>1
set(handles.push_CANCEL, 'Enable','on');
set(handles.push_CROP, 'Enable','on');
handles.h=h;
% getPosition(h)
guidata(hObject, handles);
uiwait(handles.figure1);
end
if sum(size(h))==0
try, close(handles.h1), catch, end
uiresume(handles.figure1);
% delete(handles.figure1);
% delete(handles.figure1);
% figure1_CloseRequestFcn(handles.figure1,eventdata, handles);
end
% --- Outputs from this function are returned to the command line.
function varargout = gui_Image_Crop_1_OutputFcn(hObject, eventdata, handles)
% varargout cell array for returning output args (see VARARGOUT);
% hObject handle to figure
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% Get default command line output from handles structure
varargout{1} = handles.output;
varargout{2} = handles.LOC;
% guidata(hObject, handles);
% The figure can be deleted now
delete(handles.figure1);
% --- Executes on button press in push_CROP.
function push_CROP_Callback(hObject, eventdata, handles)
% hObject handle to push_CROP (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
handles.output = get(hObject,'String');
handles.LOC=getPosition(handles.h);
% Update handles structure
guidata(hObject, handles);
% Use UIRESUME instead of delete because the OutputFcn needs
% to get the updated handles structure.
uiresume(handles.figure1);
% --- Executes on button press in push_CANCEL.
function push_CANCEL_Callback(hObject, eventdata, handles)
% hObject handle to push_CANCEL (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
handles.output = get(hObject,'String');
handles.LOC= [];
% Update handles structure
guidata(hObject, handles);
% Use UIRESUME instead of delete because the OutputFcn needs
% to get the updated handles structure.
uiresume(handles.figure1);
% --- Executes when user attempts to close figure1.
function figure1_CloseRequestFcn(hObject, eventdata, handles)
% % % % % hObject handle to figure1 (see GCBO)
% % % % % eventdata reserved - to be defined in a future version of MATLAB
% % % % % handles structure with handles and user data (see GUIDATA)
% % % %
% % % % if isequal(get(hObject, 'waitstatus'), 'waiting')
% % % % % The GUI is still in UIWAIT, us UIRESUME
% % % % try close(handles.h1), catch, end
% % % % uiresume(hObject);
% % % % else
% % % % % The GUI is no longer waiting, just close it
% % % % try close(handles.h1), catch, end
% % % % delete(hObject);
% % % % end
try close(handles.h1), catch, end
% --- Executes on key press over figure1 with no controls selected.
function figure1_KeyPressFcn(hObject, eventdata, handles)
% hObject handle to figure1 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% Check for "enter" or "escape"
if isequal(get(hObject,'CurrentKey'),'escape')
% User said no by hitting escape
handles.output = 'CANCEL';
% Update handles structure
guidata(hObject, handles);
uiresume(handles.figure1);
end
if isequal(get(hObject,'CurrentKey'),'return')
uiresume(handles.figure1);
end
% --- Executes on button press in push_RESET.
function push_RESET_Callback(hObject, eventdata, handles)
% hObject handle to push_RESET (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)

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function varargout = gui_ask_cal_KNOWN_Point(varargin)
% GUI_ASK_CAL_KNOWN_POINT MATLAB code for gui_ask_cal_KNOWN_Point.fig
% GUI_ASK_CAL_KNOWN_POINT by itself, creates a new GUI_ASK_CAL_KNOWN_POINT or raises the
% existing singleton*.
%
% H = GUI_ASK_CAL_KNOWN_POINT returns the handle to a new GUI_ASK_CAL_KNOWN_POINT or the handle to
% the existing singleton*.
%
% GUI_ASK_CAL_KNOWN_POINT('CALLBACK',hObject,eventData,handles,...) calls the local
% function named CALLBACK in GUI_ASK_CAL_KNOWN_POINT.M with the given input arguments.
%
% GUI_ASK_CAL_KNOWN_POINT('Property','Value',...) creates a new GUI_ASK_CAL_KNOWN_POINT or raises the
% existing singleton*. Starting from the left, property value pairs are
% applied to the GUI before gui_ask_cal_KNOWN_Point_OpeningFcn gets called. An
% unrecognized property name or invalid value makes property application
% stop. All inputs are passed to gui_ask_cal_KNOWN_Point_OpeningFcn via varargin.
%
% *See GUI Options on GUIDE's Tools menu. Choose "GUI allows only one
% instance to run (singleton)".
%
% See also: GUIDE, GUIDATA, GUIHANDLES
% Edit the above text to modify the response to help gui_ask_cal_KNOWN_Point
% Last Modified by GUIDE v2.5 03-Aug-2018 03:25:03
% Begin initialization code - DO NOT EDIT
gui_Singleton = 1;
gui_State = struct('gui_Name', mfilename, ...
'gui_Singleton', gui_Singleton, ...
'gui_OpeningFcn', @gui_ask_cal_KNOWN_Point_OpeningFcn, ...
'gui_OutputFcn', @gui_ask_cal_KNOWN_Point_OutputFcn, ...
'gui_LayoutFcn', [] , ...
'gui_Callback', []);
if nargin && ischar(varargin{1})
gui_State.gui_Callback = str2func(varargin{1});
end
if nargout
[varargout{1:nargout}] = gui_mainfcn(gui_State, varargin{:});
else
gui_mainfcn(gui_State, varargin{:});
end
% End initialization code - DO NOT EDIT
% --- Executes just before gui_ask_cal_KNOWN_Point is made visible.
function gui_ask_cal_KNOWN_Point_OpeningFcn(hObject, eventdata, handles, varargin)
% This function has no output args, see OutputFcn.
% hObject handle to figure
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% varargin command line arguments to gui_ask_cal_KNOWN_Point (see VARARGIN)
% Choose default command line output for gui_ask_cal_KNOWN_Point
handles.output = 'Cancel';
% Update handles structure
guidata(hObject, handles);
% Insert custom Title and Text if specified by the user
% Hint: when choosing keywords, be sure they are not easily confused
% with existing figure properties. See the output of set(figure) for
% a list of figure properties.
if(nargin > 3)
for index = 1:2:(nargin-3),
if nargin-3==index, break, end
switch lower(varargin{index})
case 'title'
set(hObject, 'Name', varargin{index+1});
case 'string'
set(handles.text1, 'String', varargin{index+1});
end
end
end
% Determine the position of the dialog - centered on the callback figure
% if available, else, centered on the screen
FigPos=get(0,'DefaultFigurePosition');
OldUnits = get(hObject, 'Units');
set(hObject, 'Units', 'pixels');
OldPos = get(hObject,'Position');
FigWidth = OldPos(3);
FigHeight = OldPos(4);
if isempty(gcbf)
ScreenUnits=get(0,'Units');
set(0,'Units','pixels');
ScreenSize=get(0,'ScreenSize');
set(0,'Units',ScreenUnits);
FigPos(1)=1/2*(ScreenSize(3)-FigWidth);
FigPos(2)=2/3*(ScreenSize(4)-FigHeight);
else
GCBFOldUnits = get(gcbf,'Units');
set(gcbf,'Units','pixels');
GCBFPos = get(gcbf,'Position');
set(gcbf,'Units',GCBFOldUnits);
FigPos(1:2) = [(GCBFPos(1) + GCBFPos(3) / 2) - FigWidth / 2, ...
(GCBFPos(2) + GCBFPos(4) / 2) - FigHeight / 2];
end
FigPos(3:4)=[FigWidth FigHeight];
set(hObject, 'Position', FigPos);
set(hObject, 'Units', OldUnits);
% Show a question icon from dialogicons.mat - variables questIconData
% and questIconMap
% load dialogicons.mat
%
% IconData=questIconData;
% questIconMap(256,:) = get(handles.figure1, 'Color');
% IconCMap=questIconMap;
%
% % Img=image(IconData, 'Parent', handles.axes1);
% set(handles.figure1, 'Colormap', IconCMap);
%
% set(handles.axes1, ...
% 'Visible', 'off', ...
% 'YDir' , 'reverse' , ...
% 'XLim' , get(Img,'XData'), ...
% 'YLim' , get(Img,'YData') ...
% );
% Make the GUI modal
set(handles.figure1,'WindowStyle','modal')
set(handles.push_SET, 'Enable','off');
set(handles.edit1, 'Enable','off');
set(handles.push_CANCEL, 'Enable','off');
handles.value=0;
handles.image=varargin{1};
guidata(hObject, handles);
axes(handles.axes3); imshow(handles.image,[]);
get_coordinates1(hObject, eventdata, handles);
% UIWAIT makes gui_ask_cal_KNOWN_Point wait for user response (see UIRESUME)
uiwait(handles.figure1);
function get_coordinates1(hObject, eventdata, handles)
xx=[];
yy=[];
iter=0;
% clf
% axes(handles.axes1); imshow(handles.image,[]);
while 1
[x y button]=ginput(1);
% if button==27
% xx=[];
% yy=[];
% iter=0;
% end
%
if button==3
if iter==2,
xx=xx(end); yy=yy(end);
iter=1;
end
xx=[xx;x];
yy=[yy;y];
iter=iter+1;
imshow(handles.image,[]),
h=line(xx,yy);
h.LineWidth=2;
h.Color=[1 0 0];
pause(0.2)
if iter==2, break; end
end
end
set(handles.push_SET, 'Enable','on');
set(handles.edit1, 'Enable','on');
set(handles.push_CANCEL, 'Enable','on');
set(handles.text_DISPLAY, 'String',num2str(handles.value));
handles.xx=xx(end-1:end);
handles.yy=yy(end-1:end);
varargout{2}=handles.xx;
varargout{3}=handles.yy;
guidata(hObject, handles);
% --- Outputs from this function are returned to the command line.
function varargout = gui_ask_cal_KNOWN_Point_OutputFcn(hObject, eventdata, handles)
% varargout cell array for returning output args (see VARARGOUT);
% hObject handle to figure
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% Get default command line output from handles structure
varargout{1} = handles.output;
varargout{2}=handles.xx;
varargout{3}=handles.yy;
varargout{4}=handles.value;
% The figure can be deleted now
delete(handles.figure1);
% --- Executes on button press in push_SET.
function push_SET_Callback(hObject, eventdata, handles)
% hObject handle to push_SET (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
handles.output = get(hObject,'String');
% Update handles structure
guidata(hObject, handles);
% Use UIRESUME instead of delete because the OutputFcn needs
% to get the updated handles structure.
uiresume(handles.figure1);
% --- Executes on button press in push_CANCEL.
function push_CANCEL_Callback(hObject, eventdata, handles)
% hObject handle to push_CANCEL (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
handles.output = get(hObject,'String');
% Update handles structure
guidata(hObject, handles);
% Use UIRESUME instead of delete because the OutputFcn needs
% to get the updated handles structure.
uiresume(handles.figure1);
% --- Executes when user attempts to close figure1.
function figure1_CloseRequestFcn(hObject, eventdata, handles)
% hObject handle to figure1 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
if isequal(get(hObject, 'waitstatus'), 'waiting')
% The GUI is still in UIWAIT, us UIRESUME
uiresume(hObject);
else
% The GUI is no longer waiting, just close it
delete(hObject);
end
% --- Executes on key press over figure1 with no controls selected.
function figure1_KeyPressFcn(hObject, eventdata, handles)
% hObject handle to figure1 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% Check for "enter" or "escape"
if isequal(get(hObject,'CurrentKey'),'escape')
% User said no by hitting escape
handles.output = 'No';
% Update handles structure
guidata(hObject, handles);
uiresume(handles.figure1);
end
if isequal(get(hObject,'CurrentKey'),'return')
uiresume(handles.figure1);
end
function edit1_Callback(hObject, eventdata, handles)
% hObject handle to edit1 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% Hints: get(hObject,'String') returns contents of edit1 as text
% str2double(get(hObject,'String')) returns contents of edit1 as a double
value = str2double(get(hObject,'String')) ;
if(isnan(value)), handles.value=0; end
if(~isnan(value)), handles.value=value; end
set(handles.text_DISPLAY, 'String',num2str(handles.value));
guidata(hObject, handles);
% --- Executes during object creation, after setting all properties.
function edit1_CreateFcn(hObject, eventdata, handles)
% hObject handle to edit1 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles empty - handles not created until after all CreateFcns called
% Hint: edit controls usually have a white background on Windows.
% See ISPC and COMPUTER.
if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor'))
set(hObject,'BackgroundColor','white');
end
% --- Executes on button press in push_RESET.
function push_RESET_Callback(hObject, eventdata, handles)
% hObject handle to push_RESET (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
set(handles.push_SET, 'Enable','off');
set(handles.edit1, 'Enable','off');
imshow(handles.image,[]),
get_coordinates1(hObject, eventdata, handles)
% --- Executes during object creation, after setting all properties.
function text_DISPLAY_CreateFcn(hObject, eventdata, handles)
% hObject handle to text_DISPLAY (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles empty - handles not created until after all CreateFcns called

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function varargout = gui_ask_calibration1(varargin)
% GUI_ASK_CALIBRATION1 MATLAB code for gui_ask_calibration1.fig
% GUI_ASK_CALIBRATION1 by itself, creates a new GUI_ASK_CALIBRATION1 or raises the
% existing singleton*.
%
% H = GUI_ASK_CALIBRATION1 returns the handle to a new GUI_ASK_CALIBRATION1 or the handle to
% the existing singleton*.
%
% GUI_ASK_CALIBRATION1('CALLBACK',hObject,eventData,handles,...) calls the local
% function named CALLBACK in GUI_ASK_CALIBRATION1.M with the given input arguments.
%
% GUI_ASK_CALIBRATION1('Property','Value',...) creates a new GUI_ASK_CALIBRATION1 or raises the
% existing singleton*. Starting from the left, property value pairs are
% applied to the GUI before gui_ask_calibration1_OpeningFcn gets called. An
% unrecognized property name or invalid value makes property application
% stop. All inputs are passed to gui_ask_calibration1_OpeningFcn via varargin.
%
% *See GUI Options on GUIDE's Tools menu. Choose "GUI allows only one
% instance to run (singleton)".
%
% See also: GUIDE, GUIDATA, GUIHANDLES
% Edit the above text to modify the response to help gui_ask_calibration1
% Last Modified by GUIDE v2.5 10-May-2018 13:04:12
% Begin initialization code - DO NOT EDIT
gui_Singleton = 1;
gui_State = struct('gui_Name', mfilename, ...
'gui_Singleton', gui_Singleton, ...
'gui_OpeningFcn', @gui_ask_calibration1_OpeningFcn, ...
'gui_OutputFcn', @gui_ask_calibration1_OutputFcn, ...
'gui_LayoutFcn', [] , ...
'gui_Callback', []);
if nargin && ischar(varargin{1})
gui_State.gui_Callback = str2func(varargin{1});
end
if nargout
[varargout{1:nargout}] = gui_mainfcn(gui_State, varargin{:});
else
gui_mainfcn(gui_State, varargin{:});
end
% End initialization code - DO NOT EDIT
% --- Executes just before gui_ask_calibration1 is made visible.
function gui_ask_calibration1_OpeningFcn(hObject, eventdata, handles, varargin)
% This function has no output args, see OutputFcn.
% hObject handle to figure
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% varargin command line arguments to gui_ask_calibration1 (see VARARGIN)
% Choose default command line output for gui_ask_calibration1
handles.output = 'Yes';
% Update handles structure
guidata(hObject, handles);
% Insert custom Title and Text if specified by the user
% Hint: when choosing keywords, be sure they are not easily confused
% with existing figure properties. See the output of set(figure) for
% a list of figure properties.
if(nargin > 3)
for index = 1:2:(nargin-3),
if nargin-3==index, break, end
switch lower(varargin{index})
case 'title'
set(hObject, 'Name', varargin{index+1});
case 'string'
set(handles.text1, 'String', varargin{index+1});
end
end
end
% Determine the position of the dialog - centered on the callback figure
% if available, else, centered on the screen
FigPos=get(0,'DefaultFigurePosition');
OldUnits = get(hObject, 'Units');
set(hObject, 'Units', 'pixels');
OldPos = get(hObject,'Position');
FigWidth = OldPos(3);
FigHeight = OldPos(4);
if isempty(gcbf)
ScreenUnits=get(0,'Units');
set(0,'Units','pixels');
ScreenSize=get(0,'ScreenSize');
set(0,'Units',ScreenUnits);
FigPos(1)=1/2*(ScreenSize(3)-FigWidth);
FigPos(2)=2/3*(ScreenSize(4)-FigHeight);
else
GCBFOldUnits = get(gcbf,'Units');
set(gcbf,'Units','pixels');
GCBFPos = get(gcbf,'Position');
set(gcbf,'Units',GCBFOldUnits);
FigPos(1:2) = [(GCBFPos(1) + GCBFPos(3) / 2) - FigWidth / 2, ...
(GCBFPos(2) + GCBFPos(4) / 2) - FigHeight / 2];
end
FigPos(3:4)=[FigWidth FigHeight];
set(hObject, 'Position', FigPos);
set(hObject, 'Units', OldUnits);
% Show a question icon from dialogicons.mat - variables questIconData
% and questIconMap
load dialogicons.mat
IconData=questIconData;
questIconMap(256,:) = get(handles.figure1, 'Color');
IconCMap=questIconMap;
% Img=image(IconData, 'Parent', handles.axes1);
% % % % % % Img=imshow(varargin{1}, 'Parent', handles.axes1);
% % % % % % % set(handles.figure1, 'Colormap', IconCMap);
% % % % % %
% % % % % % set(handles.axes1, ...
% % % % % % 'Visible', 'off', ...
% % % % % % 'YDir' , 'reverse' , ...
% % % % % % 'XLim' , get(Img,'XData'), ...
% % % % % % 'YLim' , get(Img,'YData') ...
% % % % % % );
% Make the GUI modal
set(handles.figure1,'WindowStyle','modal')
% [xx, yy]= get_coordinates(varargin{1});
handles.image=varargin{1};
guidata(hObject, handles);
axes(handles.axes1); imshow(handles.image,[]);
get_coordinates1(hObject, eventdata, handles);
% UIWAIT makes gui_ask_calibration1 wait for user response (see UIRESUME)
uiwait(handles.figure1);
function get_coordinates1(hObject, eventdata, handles)
xx=[];
yy=[];
iter=0;
% clf
% axes(handles.axes1); imshow(handles.image,[]);
while 1
[x y button]=ginput(1);
% if button==27
% xx=[];
% yy=[];
% iter=0;
% end
%
if button==3
if iter==2,
xx=xx(end); yy=yy(end);
iter=1;
end
xx=[xx;x];
yy=[yy;y];
iter=iter+1;
imshow(handles.image,[]),
h=line(xx,yy);
h.LineWidth=2;
h.Color=[1 0 0];
pause(0.2)
if iter==2, break; end
end
end
handles.xx=xx(end-1:end);
handles.yy=yy(end-1:end);
varargout{2}=handles.xx;
varargout{3}=handles.yy;
guidata(hObject, handles);
% --- Outputs from this function are returned to the command line.
function varargout = gui_ask_calibration1_OutputFcn(hObject, eventdata, handles)
% varargout cell array for returning output args (see VARARGOUT);
% hObject handle to figure
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% Get default command line output from handles structure
varargout{1} = handles.output;
varargout{2}=handles.xx;
varargout{3}=handles.yy;
% The figure can be deleted now
delete(handles.figure1);
% --- Executes on button press in pushbutton1.
function pushbutton1_Callback(hObject, eventdata, handles)
% hObject handle to pushbutton1 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
handles.output = get(hObject,'String');
% Update handles structure
guidata(hObject, handles);
% Use UIRESUME instead of delete because the OutputFcn needs
% to get the updated handles structure.
uiresume(handles.figure1);
% --- Executes on button press in pushbutton2.
function pushbutton2_Callback(hObject, eventdata, handles)
% hObject handle to pushbutton2 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
handles.output = get(hObject,'String');
% Update handles structure
guidata(hObject, handles);
% Use UIRESUME instead of delete because the OutputFcn needs
% to get the updated handles structure.
uiresume(handles.figure1);
% --- Executes when user attempts to close figure1.
function figure1_CloseRequestFcn(hObject, eventdata, handles)
% hObject handle to figure1 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
if isequal(get(hObject, 'waitstatus'), 'waiting')
% The GUI is still in UIWAIT, us UIRESUME
uiresume(hObject);
else
% The GUI is no longer waiting, just close it
% % % delete(hObject);
end
% --- Executes on key press over figure1 with no controls selected.
function figure1_KeyPressFcn(hObject, eventdata, handles)
% hObject handle to figure1 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% Check for "enter" or "escape"
if isequal(get(hObject,'CurrentKey'),'escape')
% User said no by hitting escape
handles.output = 'No';
% Update handles structure
guidata(hObject, handles);
uiresume(handles.figure1);
end
if isequal(get(hObject,'CurrentKey'),'return')
uiresume(handles.figure1);
end
% --- Executes on button press in pushbutton3.
function pushbutton3_Callback(hObject, eventdata, handles)
% hObject handle to pushbutton3 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
imshow(handles.image,[]),
get_coordinates1(hObject, eventdata, handles)

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function [ varargout] = gui_confirm_DICstart2(varargin)
% GUI_CONFIRM_DICSTART2 MATLAB code for gui_confirm_DICstart2.fig
% GUI_CONFIRM_DICSTART2 by itself, creates a new GUI_CONFIRM_DICSTART2 or raises the
% existing singleton*.
%
% H = GUI_CONFIRM_DICSTART2 returns the handle to a new GUI_CONFIRM_DICSTART2 or the handle to
% the existing singleton*.
%
% GUI_CONFIRM_DICSTART2('CALLBACK',hObject,eventData,handles,...) calls the local
% function named CALLBACK in GUI_CONFIRM_DICSTART2.M with the given input arguments.
%
% GUI_CONFIRM_DICSTART2('Property','Value',...) creates a new GUI_CONFIRM_DICSTART2 or raises the
% existing singleton*. Starting from the left, property value pairs are
% applied to the GUI before gui_confirm_DICstart2_OpeningFcn gets called. An
% unrecognized property name or invalid value makes property application
% stop. All inputs are passed to gui_confirm_DICstart2_OpeningFcn via varargin.
%
% *See GUI Options on GUIDE's Tools menu. Choose "GUI allows only one
% instance to run (singleton)".
%
% See also: GUIDE, GUIDATA, GUIHANDLES
% Edit the above text to modify the response to help gui_confirm_DICstart2
% Last Modified by GUIDE v2.5 22-May-2018 22:43:57
% Begin initialization code - DO NOT EDIT
gui_Singleton = 1;
gui_State = struct('gui_Name', mfilename, ...
'gui_Singleton', gui_Singleton, ...
'gui_OpeningFcn', @gui_confirm_DICstart2_OpeningFcn, ...
'gui_OutputFcn', @gui_confirm_DICstart2_OutputFcn, ...
'gui_LayoutFcn', [] , ...
'gui_Callback', []);
if nargin && ischar(varargin{1})
gui_State.gui_Callback = str2func(varargin{1});
end
if nargout
[varargout{1:nargout}] = gui_mainfcn(gui_State, varargin{:});
else
gui_mainfcn(gui_State, varargin{:});
end
% End initialization code - DO NOT EDIT
% --- Executes just before gui_confirm_DICstart2 is made visible.
function gui_confirm_DICstart2_OpeningFcn(hObject, eventdata, handles, varargin)
% This function has no output args, see OutputFcn.
% hObject handle to figure
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% varargin command line arguments to gui_confirm_DICstart2 (see VARARGIN)
% Choose default command line output for gui_confirm_DICstart2
handles.output = 'Yes';
set(handles.edt,'String',varargin{1});
handles.destination=varargin{2};
% set(handles.edit2,'String',handles.destination);
set(handles.text7,'String',handles.destination);
% Update handles structure
guidata(hObject, handles);
% Insert custom Title and Text if specified by the user
% Hint: when choosing keywords, be sure they are not easily confused
% with existing figure properties. See the output of set(figure) for
% a list of figure properties.
if(nargin > 3)
for index = 1:2:(nargin-3),
if nargin-3==index, break, end
switch lower(varargin{index})
case 'title'
set(hObject, 'Name', varargin{index+1});
case 'string'
set(handles.text1, 'String', varargin{index+1});
end
end
end
% Determine the position of the dialog - centered on the callback figure
% if available, else, centered on the screen
FigPos=get(0,'DefaultFigurePosition');
OldUnits = get(hObject, 'Units');
set(hObject, 'Units', 'pixels');
OldPos = get(hObject,'Position');
FigWidth = OldPos(3);
FigHeight = OldPos(4);
if isempty(gcbf)
ScreenUnits=get(0,'Units');
set(0,'Units','pixels');
ScreenSize=get(0,'ScreenSize');
set(0,'Units',ScreenUnits);
FigPos(1)=1/2*(ScreenSize(3)-FigWidth);
FigPos(2)=2/3*(ScreenSize(4)-FigHeight);
else
GCBFOldUnits = get(gcbf,'Units');
set(gcbf,'Units','pixels');
GCBFPos = get(gcbf,'Position');
set(gcbf,'Units',GCBFOldUnits);
FigPos(1:2) = [(GCBFPos(1) + GCBFPos(3) / 2) - FigWidth / 2, ...
(GCBFPos(2) + GCBFPos(4) / 2) - FigHeight / 2];
end
FigPos(3:4)=[FigWidth FigHeight];
set(hObject, 'Position', FigPos);
set(hObject, 'Units', OldUnits);
% Show a question icon from dialogicons.mat - variables questIconData
% and questIconMap
load dialogicons.mat
IconData=questIconData;
questIconMap(256,:) = get(handles.figure1, 'Color');
IconCMap=questIconMap;
Img=image(IconData, 'Parent', handles.axes1);
set(handles.figure1, 'Colormap', IconCMap);
set(handles.axes1, ...
'Visible', 'off', ...
'YDir' , 'reverse' , ...
'XLim' , get(Img,'XData'), ...
'YLim' , get(Img,'YData') ...
);
% Make the GUI modal
set(handles.figure1,'WindowStyle','modal')
% UIWAIT makes gui_confirm_DICstart2 wait for user response (see UIRESUME)
uiwait(handles.figure1);
% --- Outputs from this function are returned to the command line.
function varargout = gui_confirm_DICstart2_OutputFcn(hObject, eventdata, handles)
% varargout cell array for returning output args (see VARARGOUT);
% hObject handle to figure
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% Get default command line output from handles structure
try
varargout{1} = handles.output;
varargout{2} = handles.destination;
end
% The figure can be deleted now
delete(handles.figure1);
% --- Executes on button press in pushbutton1.
function pushbutton1_Callback(hObject, eventdata, handles)
% hObject handle to pushbutton1 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
handles.output = get(hObject,'String');
% Update handles structure
guidata(hObject, handles);
% Use UIRESUME instead of delete because the OutputFcn needs
% to get the updated handles structure.
uiresume(handles.figure1);
% --- Executes on button press in pushbutton2.
function pushbutton2_Callback(hObject, eventdata, handles)
% hObject handle to pushbutton2 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
handles.output = get(hObject,'String');
% Update handles structure
guidata(hObject, handles);
% Use UIRESUME instead of delete because the OutputFcn needs
% to get the updated handles structure.
uiresume(handles.figure1);
% --- Executes when user attempts to close figure1.
function figure1_CloseRequestFcn(hObject, eventdata, handles)
% hObject handle to figure1 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
if isequal(get(hObject, 'waitstatus'), 'waiting')
% The GUI is still in UIWAIT, us UIRESUME
uiresume(hObject);
else
% The GUI is no longer waiting, just close it
delete(hObject);
end
% --- Executes on key press over figure1 with no controls selected.
function figure1_KeyPressFcn(hObject, eventdata, handles)
% hObject handle to figure1 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% Check for "enter" or "escape"
if isequal(get(hObject,'CurrentKey'),'escape')
% User said no by hitting escape
handles.output = 'No';
% Update handles structure
guidata(hObject, handles);
uiresume(handles.figure1);
end
if isequal(get(hObject,'CurrentKey'),'return')
uiresume(handles.figure1);
end
% function edit2_Callback(hObject, eventdata, handles)
% % hObject handle to edit2 (see GCBO)
% % eventdata reserved - to be defined in a future version of MATLAB
% % handles structure with handles and user data (see GUIDATA)
%
% % Hints: get(hObject,'String') returns contents of edit2 as text
% % str2double(get(hObject,'String')) returns contents of edit2 as a double
% % --- Executes during object creation, after setting all properties.
% function edit2_CreateFcn(hObject, eventdata, handles)
% % hObject handle to edit2 (see GCBO)
% % eventdata reserved - to be defined in a future version of MATLAB
% % handles empty - handles not created until after all CreateFcns called
%
% % Hint: edit controls usually have a white background on Windows.
% % See ISPC and COMPUTER.
% if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor'))
% set(hObject,'BackgroundColor','white');
% end
% --- Executes on button press in push_set_path.
function push_set_path_Callback(hObject, eventdata, handles)
% hObject handle to push_set_path (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
[pathname] = uigetdir(handles.destination,'Select Destination Folder');
handles.destination = pathname;
guidata(hObject, handles);
% set(handles.edit2,'String',handles.destination);
% --- Executes during object creation, after setting all properties.
function edt_CreateFcn(hObject, eventdata, handles)
% hObject handle to edt (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles empty - handles not created until after all CreateFcns called
%varargin{:}
% set(handles.edt,'String',varargin{1});
% guidata(hObject, handles);
% --- Executes during object creation, after setting all properties.
function text7_CreateFcn(hObject, eventdata, handles)
% hObject handle to text7 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles empty - handles not created until after all CreateFcns called
% set(handles.text7,'String',handles.destination);

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function varargout = gui_set_resolution_3(varargin)
% GUI_SET_RESOLUTION_3 MATLAB code for gui_set_resolution_3.fig
% GUI_SET_RESOLUTION_3 by itself, creates a new GUI_SET_RESOLUTION_3 or raises the
% existing singleton*.
%
% H = GUI_SET_RESOLUTION_3 returns the handle to a new GUI_SET_RESOLUTION_3 or the handle to
% the existing singleton*.
%
% GUI_SET_RESOLUTION_3('CALLBACK',hObject,eventData,handles,...) calls the local
% function named CALLBACK in GUI_SET_RESOLUTION_3.M with the given input arguments.
%
% GUI_SET_RESOLUTION_3('Property','Value',...) creates a new GUI_SET_RESOLUTION_3 or raises the
% existing singleton*. Starting from the left, property value pairs are
% applied to the GUI before gui_set_resolution_3_OpeningFcn gets called. An
% unrecognized property name or invalid value makes property application
% stop. All inputs are passed to gui_set_resolution_3_OpeningFcn via varargin.
%
% *See GUI Options on GUIDE's Tools menu. Choose "GUI allows only one
% instance to run (singleton)".
%
% See also: GUIDE, GUIDATA, GUIHANDLES
% Edit the above text to modify the response to help gui_set_resolution_3
% Last Modified by GUIDE v2.5 03-Aug-2018 03:41:41
% Begin initialization code - DO NOT EDIT
gui_Singleton = 1;
gui_State = struct('gui_Name', mfilename, ...
'gui_Singleton', gui_Singleton, ...
'gui_OpeningFcn', @gui_set_resolution_3_OpeningFcn, ...
'gui_OutputFcn', @gui_set_resolution_3_OutputFcn, ...
'gui_LayoutFcn', [] , ...
'gui_Callback', []);
if nargin && ischar(varargin{1})
gui_State.gui_Callback = str2func(varargin{1});
end
if nargout
[varargout{1:nargout}] = gui_mainfcn(gui_State, varargin{:});
else
gui_mainfcn(gui_State, varargin{:});
end
% End initialization code - DO NOT EDIT
% --- Executes just before gui_set_resolution_3 is made visible.
function gui_set_resolution_3_OpeningFcn(hObject, eventdata, handles, varargin)
% This function has no output args, see OutputFcn.
% hObject handle to figure
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% varargin command line arguments to gui_set_resolution_3 (see VARARGIN)
% Choose default command line output for gui_set_resolution_3
% handles.output1 = 1;
% handles.output1='aadata';
handles.output1='1';
handles.output2 = '1';
handles.output = handles.output1;
% set(handles.edit1,'Enable','off');
set(handles.radio_from_number,'Value',1);
handles.path =varargin{2};
handles.Ext=varargin{3};
% parseInputs(varargin)
% Update handles structure
guidata(hObject, handles);
% Insert custom Title and Text if specified by the user
% Hint: when choosing keywords, be sure they are not easily confused
% with existing figure properties. See the output of set(figure) for
% a list of figure properties.
if(nargin > 3)
for index = 1:2:(nargin-3),
if nargin-3==index, break, end
switch lower(varargin{index})
case 'title'
set(hObject, 'Name', varargin{index+1});
case 'string'
set(handles.text1, 'String', varargin{index+1});
end
end
end
% Determine the position of the dialog - centered on the callback figure
% if available, else, centered on the screen
FigPos=get(0,'DefaultFigurePosition');
OldUnits = get(hObject, 'Units');
set(hObject, 'Units', 'pixels');
OldPos = get(hObject,'Position');
FigWidth = OldPos(3);
FigHeight = OldPos(4);
if isempty(gcbf)
ScreenUnits=get(0,'Units');
set(0,'Units','pixels');
ScreenSize=get(0,'ScreenSize');
set(0,'Units',ScreenUnits);
FigPos(1)=1/2*(ScreenSize(3)-FigWidth);
FigPos(2)=2/3*(ScreenSize(4)-FigHeight);
else
GCBFOldUnits = get(gcbf,'Units');
set(gcbf,'Units','pixels');
GCBFPos = get(gcbf,'Position');
set(gcbf,'Units',GCBFOldUnits);
FigPos(1:2) = [(GCBFPos(1) + GCBFPos(3) / 2) - FigWidth / 2, ...
(GCBFPos(2) + GCBFPos(4) / 2) - FigHeight / 2];
end
FigPos(3:4)=[FigWidth FigHeight];
set(hObject, 'Position', FigPos);
set(hObject, 'Units', OldUnits);
% Show a question icon from dialogicons.mat - variables questIconData
% and questIconMap
load dialogicons.mat;
IconData=questIconData;
questIconMap(256,:) = get(handles.figure1, 'Color');
IconCMap=questIconMap;
Img=image(IconData, 'Parent', handles.axes1);
set(handles.figure1, 'Colormap', IconCMap);
set(handles.axes1, ...
'Visible', 'off', ...
'YDir' , 'reverse' , ...
'XLim' , get(Img,'XData'), ...
'YLim' , get(Img,'YData') ...
);
% Make the GUI modal
set(handles.figure1,'WindowStyle','modal')
% UIWAIT makes gui_set_resolution_3 wait for user response (see UIRESUME)
uiwait(handles.figure1);
% --- Outputs from this function are returned to the command line.
function varargout = gui_set_resolution_3_OutputFcn(hObject, eventdata, handles)
% varargout cell array for returning output args (see VARARGOUT);
% hObject handle to figure
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% Get default command line output from handles structure
varargout{1} = handles.output1;
varargout{2} = handles.output1;
% The figure can be deleted now
delete(handles.figure1);
% --- Executes on button press in push_yes.
function push_yes_Callback(hObject, eventdata, handles)
% hObject handle to push_yes (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
handles.output = handles.output2; %get(hObject,'String');
% Update handles structure
guidata(hObject, handles);
% Use UIRESUME instead of delete because the OutputFcn needs
% to get the updated handles structure.
uiresume(handles.figure1);
% --- Executes on button press in push_NO.
function push_NO_Callback(hObject, eventdata, handles)
% hObject handle to push_NO (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% handles.output = handles.output1; % get(hObject,'String');
handles.output = 'aadata';
handles.output1 = 'aadata';
handles.output2 = 'aadata';
% Update handles structure
guidata(hObject, handles);
% Use UIRESUME instead of delete because the OutputFcn needs
% to get the updated handles structure.
uiresume(handles.figure1);
% --- Executes when user attempts to close figure1.
function figure1_CloseRequestFcn(hObject, eventdata, handles)
% hObject handle to figure1 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
if isequal(get(hObject, 'waitstatus'), 'waiting')
% The GUI is still in UIWAIT, us UIRESUME
uiresume(hObject);
else
% The GUI is no longer waiting, just close it
delete(hObject);
end
% --- Executes on key press over figure1 with no controls selected.
function figure1_KeyPressFcn(hObject, eventdata, handles)
% hObject handle to figure1 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% Check for "enter" or "escape"
if isequal(get(hObject,'CurrentKey'),'escape')
% User said no by hitting escape
handles.output = handles.output1; %'No';
% Update handles structure
guidata(hObject, handles);
uiresume(handles.figure1);
end
if isequal(get(hObject,'CurrentKey'),'return')
uiresume(handles.figure1);
end
function edit1_Callback(hObject, eventdata, handles)
% hObject handle to edit1 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% Hints: get(hObject,'String') returns contents of edit1 as text
% str2double(get(hObject,'String')) returns contents of edit1 as a double
handles.output1 = get(hObject,'String');
guidata(hObject, handles);
% --- Executes during object creation, after setting all properties.
function edit1_CreateFcn(hObject, eventdata, handles)
% hObject handle to edit1 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles empty - handles not created until after all CreateFcns called
% Hint: edit controls usually have a white background on Windows.
% See ISPC and COMPUTER.
if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor'))
set(hObject,'BackgroundColor','white');
end
% --- Executes when selected object is changed in uibuttongroup1.
function uibuttongroup1_SelectionChangedFcn(hObject, eventdata, handles)
% hObject handle to the selected object in uibuttongroup1
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% handles empty - handles not created until after all CreateFcns called
c= get(hObject,'String')
switch c
case {'1 pixel ='}
set(handles.edit1,'Enable','on');
handles.output1= handles.output2;
case 'Calculate from CALIBRATION GRID'
set(handles.edit1,'Enable','off');
set(handles.dis_txt_2, 'String','');
[filename,pathname, FILTERINDEX] = uigetfile( ...
{strcat('*', handles.Ext), strcat(handles.Ext,'-files') }, ...
'MultiSelect', 'on', 'Selet the Calibration image', handles.path);
handles.ref_file=[];
if FILTERINDEX==1
handles.ref_file = strcat(pathname, filename);
tmp = imread(handles.ref_file );
[tmp1, tmp2, tmp3]=gui_ask_calibration1(tmp);
else
tmp1='Cancel';
% set(handles.radio_from_null,'Value',1);
handles.output1='1';
set(handles.radio_from_number,'Value',1);
set(handles.edit1,'Enable','on');
% set(handles.radio_from_number,'Value',1);
end
% tmp1='Cancel';
% try
% [tmp1, tmp2, tmp3]=gui_ask_calibration1(tmp)
% catch
% end
switch tmp1
case 'Ok'
dst=sqrt((tmp2(1)-tmp2(2)).^2+(tmp3(1)-tmp3(2)).^2);
if ~isnan(dst), handles.output1 = 1e6*50e-3/dst;
set(handles.dis_tex, 'String', strcat(' 1 pix=' ,num2str(handles.output1),'micrometer'));
else handles.output1= handles.output2; end
guidata(hObject, handles);
case 'Cancel'
handles.output1= handles.output2;
handles.output1='1';
set(handles.radio_from_number,'Value',1);
set(handles.edit1,'Enable','on');
guidata(hObject, handles);
otherwise
handles.output1= handles.output2;
handles.output1='1';
set(handles.radio_from_number,'Value',1);
set(handles.edit1,'Enable','on');
end
%===============================================================
case 'Calculate from known image'
set(handles.edit1,'Enable','off');
set(handles.dis_tex, 'String','' );
[filename,pathname, FILTERINDEX] = uigetfile( ...
{strcat('*', handles.Ext), strcat(handles.Ext,'-files') }, ...
'MultiSelect', 'on', 'Selet the Calibration image', handles.path);
handles.ref_file=[];
if FILTERINDEX==1
handles.ref_file = strcat(pathname, filename);
tmp = imread(handles.ref_file );
[tmp1, tmp2, tmp3, tmp4]=gui_ask_cal_KNOWN_Point(tmp);
else
tmp1='Cancel';
% set(handles.radio_from_null,'Value',1);
handles.output1='1';
set(handles.radio_from_number,'Value',1);
set(handles.edit1,'Enable','on');
% set(handles.radio_from_number,'Value',1);
end
switch tmp1
case 'Set'
dst=sqrt((tmp2(1)-tmp2(2)).^2+(tmp3(1)-tmp3(2)).^2);
if ~isnan(dst), handles.output1 = 1e6*tmp4/dst;
set(handles.dis_txt_2, 'String', strcat(' 1 pix=' ,num2str(handles.output1),'micrometer'));
else, handles.output1= handles.output2; end
guidata(hObject, handles);
case 'Cancel'
handles.output1= handles.output2;
handles.output1='1';
set(handles.radio_from_number,'Value',1);
set(handles.edit1,'Enable','on');
guidata(hObject, handles);
otherwise
handles.output1= handles.output2;
handles.output1='1';
set(handles.radio_from_number,'Value',1);
set(handles.edit1,'Enable','on');
end
% figure, imshow(tmp,[])
otherwise
disp('aadata')
set(handles.edit1,'Enable','off');
handles.output1='aadata';
guidata(hObject, handles);
end
% --- Executes on button press in radio_from_number.
function radio_from_number_Callback(hObject, eventdata, handles)
% hObject handle to radio_from_number (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% Hint: get(hObject,'Value') returns toggle state of radio_from_number
handles.output1=1;
guidata(hObject, handles);
% --- Executes on button press in radio_from_null.
function radio_from_null_Callback(hObject, eventdata, handles)
% hObject handle to radio_from_null (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% Hint: get(hObject,'Value') returns toggle state of radio_from_null
% --- Executes on button press in radio_from_image.
function radio_from_image_Callback(hObject, eventdata, handles)
% hObject handle to radio_from_image (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% Hint: get(hObject,'Value') returns toggle state of radio_from_image
% --- Executes during object creation, after setting all properties.
function dis_tex_CreateFcn(hObject, eventdata, handles)
% hObject handle to dis_tex (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles empty - handles not created until after all CreateFcns called
% --- Executes on button press in radio_from_KNOWN_IMAGE.
function radio_from_KNOWN_IMAGE_Callback(hObject, eventdata, handles)
% hObject handle to radio_from_KNOWN_IMAGE (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles structure with handles and user data (see GUIDATA)
% Hint: get(hObject,'Value') returns toggle state of radio_from_KNOWN_IMAGE
% --- Executes during object creation, after setting all properties.
function dis_txt_2_CreateFcn(hObject, eventdata, handles)
% hObject handle to dis_txt_2 (see GCBO)
% eventdata reserved - to be defined in a future version of MATLAB
% handles empty - handles not created until after all CreateFcns called

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function image_background2(im2, xi,yi,value,dd, tiTl, Tltt, Hpath)
% load('DIC_vecdata.mat', 'im2', 'xi','yi','U_inp');
[x11, y11]= meshgrid(min(xi):max(xi),min(yi):max(yi));
% [a b]=meshgrid(yi,xi);
% F = TriScatteredInterp(b(:),a(:),iu(:),'natural');
% ius = F(x11,y11);
size(x11);
Yi= y11(:,1)+dd(2);
Xi= x11(1,:)++dd(1);
size(Xi);
size(Yi);
if (size(x11,1)<= size(x11,2))
sze=min(numel(Yi),numel(Xi));
sze1=max(numel(Yi),numel(Xi));
end
if (size(x11,1)> size(x11,2))
sze1=min(numel(Yi),numel(Xi));
sze=max(numel(Yi),numel(Xi));
end
iiy=repmat(Yi(:)',1, sze1);
tmp=iiy(2)-iiy(1);
iiy1= iiy-tmp;
gridy_patch_i =[iiy;iiy1;iiy1;iiy];
% size(gridy_patch_i)
%ix
tmp=[];
for iii=1:numel(Xi)
tmp=[tmp repmat(Xi(iii),1,sze)];
end
iix = tmp;
tmp=Xi(2)-Xi(1);
iix1= iix+tmp;
gridx_patch_i = [iix; iix; iix1;iix1];
size(gridx_patch_i);
data_i_trans = (value(:)'); %transpose from column to row vector
size(data_i_trans );
data_patch = [data_i_trans; data_i_trans; data_i_trans; data_i_trans]; %Same disp grad at four vertices of patch square
fig110=figure; set(fig110, 'Visible', 'off');
imshow(im2,[]); colormap('gray')
freezeColors, hold on, colormap('jet')
patch_layer = patch(gridx_patch_i,gridy_patch_i,data_patch,'EdgeColor','none','FaceAlpha',0.5);
axis ij
axis equal
title( strcat(Tltt,' ', '(Full Frame)'))
% title(['Contour plot of ',1,sprintf(' (Current image #: )',10)],...
% 'fontsize',10,'fontweight','bold')
xlabel('[ X-direction ]', 'fontsize',10,'fontweight','bold')
ylabel('[ Y-direction ]', 'fontsize',10,'fontweight','bold')
set(gca,'fontsize',10,'layer','top')
caxis([min(data_i_trans(:)),max(data_i_trans(:))])
h = colorbar('Location','EastOutside');
title(h,tiTl, 'fontsize',10)
Ttt=strcat('[Full_Frame]',Tltt);
saveas(gcf, strcat(Hpath,'\',Ttt))
close(fig110)

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function myLogfile(destination ,imageORvideo,frame_no,DefaultORcrop, REF_image, method,windo_size,overlap)
% imageORvideo='Image';
% frame_no=0;
% DefaultORcrop='Full Frame';
% REF_image='my';
% method='cross correlation';
% windo_size=50;
% overlap=0.7;
p1i=0;
%************** Output to file ********************************************
% s=cd;s=s(max(find(s=='/'))+1:end);
% strcat(destination, 'Logfile.txt' );
fid = fopen(strcat(destination, '\Logfile.txt' ), 'wt');
strcat(destination, '\Logfile.txt' )
% fprintf(fid, '%f\n%f\n%f\n%f\n%f\n%f\n%f\n%f\n%f\n%f\n%f\n%f',...
% Ms, pt1, T5, p5, rho5, M, p1i, T1i, u1i, rho1i, (Re1i/1e+06), ...
% (H/1e+06));
% fclose(fid);
fprintf(fid,'%s\t\t\t\t%s\n%s\t\t\t\t\t%d\n%s\t\t%s\n%s\t\t\t\t\t%s\n %s\t\t\t\t\t%s\n%s\t\t\t\t\t%f\n%s\t\t\t%f\n %s\t\t\t%f\n %s\t\t\t\t%f\n %s\t\t\t\t\t%f\n %s\t\t\t%f\n',...
'Types of Processing (Image or Video)', imageORvideo,...
'Total Number of Frames', frame_no,...
'Image Cropped ?',DefaultORcrop,...
'Reference Image',REF_image,...
'Method of Processing',method,...
'window size',windo_size,...
'Overlap',overlap,...
'Set IT',p1i,...
'Set IT',p1i,...
'Set IT',p1i,...
'Set IT',p1i,...
'Set IT',p1i,...
'Set IT',p1i);
fclose(fid);

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function myLogfile(destination ,imageORvideo,frame_no,DefaultORcrop, REF_image, method,windo_size,overlap)
% imageORvideo='Image';
% frame_no=0;
% DefaultORcrop='Full Frame';
% REF_image='my';
% method='cross correlation';
% windo_size=50;
% overlap=0.7;
p1i=0;
%************** Output to file ********************************************
% s=cd;s=s(max(find(s=='/'))+1:end);
% strcat(destination, 'Logfile.txt' );
fid = fopen(strcat(destination, '\Logfile.txt' ), 'wt');
strcat(destination, '\Logfile.txt' )
% fprintf(fid, '%f\n%f\n%f\n%f\n%f\n%f\n%f\n%f\n%f\n%f\n%f\n%f',...
% Ms, pt1, T5, p5, rho5, M, p1i, T1i, u1i, rho1i, (Re1i/1e+06), ...
% (H/1e+06));
% fclose(fid);
fprintf(fid,'%s\t\t\t\t%s\n%s\t\t\t\t\t%d\n%s\t\t%s\n%s\t\t\t\t\t%s\n %s\t\t\t\t\t%s\n%s\t\t\t\t\t%f\n%s\t\t\t%f\n %s\t\t\t%f\n %s\t\t\t\t%f\n %s\t\t\t\t\t%f\n %s\t\t\t%f\n',...
'Types of Processing (Image or Video)', imageORvideo,...
'Total Number of Frames', frame_no,...
'Image Cropped ?',DefaultORcrop,...
'Reference Image',REF_image,...
'This package is written by Biswajit Medhi',method,...
'window size',windo_size,...
'Overlap',overlap,...
'Set IT',p1i,...
'Set IT',p1i,...
'Set IT',p1i,...
'Set IT',p1i,...
'Set IT',p1i,...
'Set IT',p1i);
fclose(fid);

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function[imr11]= preset_image(imr1)
if (numel(size(imr1))>2), imr1=rgb2gray(imr1); end
imr11 = histeq(imr1);
imr11=double(imr11);

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function [filename, pathname, filterindex] = uigetfile_with_preview2(filterSpec, prompt, folder,callback, multiSelect)
% uigetfile_with_preview - GUI dialog window with a preview panel
%
% Syntax:
% filename = uigetfile_with_preview(filterSpec, prompt, folder, callback, multiSelect)
%
% Description:
% uigetfile_with_preview displays a file-selection dialog with an
% integrated preview panel.
%
% Inputs:
% filterSpec - similar to uigetfile's filterSpec. Examples:
% 'defaultFile.mat'
% '*.mat'
% {'MAT files', '*.mat'}
% {'Data or m files (*.m,*.mat)', {'m';'mat'}}
% prompt - optional dialog prompt (default: 'Select file')
% folder - optional default folder (default: current folder)
% callback - optional handle to a callback function with the following
% interface:
% callbackFunction(hPanel, filename)
% The callback function should check the specified file and
% update the specified panel accordingly.
% (default: [])
% multiSelect - optional flag specifying whether multiple files can be
% selected (default: false)
%
% Output:
% filename - full-path filename of the selected file(s) (or empty array)
%
% Bugs and suggestions:
% Please send to Yair Altman (altmany at gmail dot com)
%
% Change log:
% 2016-11-02: First version posted on <a href="https://www.mathworks.com/matlabcentral/fileexchange/?term=authorid%3A27420">MathWorks File Exchange</a>
%
% See also:
% uigetfile
% Programmed by Yair M. Altman: altmany(at)gmail.com
% $Revision: 1.0 $ $Date: 2016/11/02 23:43:54 $
if nargin < 1, filterSpec = {'All files','*.*'}; end
if nargin < 2, prompt = ''; end
if nargin < 3, folder = pwd; end
if nargin < 4, callback = ''; end
if nargin < 5, multiSelect = false; end
% Prepare the figure dialog window
if isempty(prompt), prompt = 'Select file'; end
hFig = dialog('Name',prompt, 'units','pixel', 'pos',[200,50,500,600]);
% Display the file-selection component
javaComponentName = 'javax.swing.JFileChooser'; %#ok<NASGU>
javaComponentName = 'com.mathworks.hg.util.dFileChooser'; % this is a MathWorks extension of JFileChooser - no good on Win7
%javaComponentName = 'com.mathworks.mwswing.MJFileChooserPerPlatform';
[hjFileChooser, hContainer] = javacomponent(javaComponentName, [0,200,500,400], hFig); %#ok<ASGLU>
hjFileChooser.setCurrentDirectory(java.io.File(folder));
hjFileChooser.setMultiSelectionEnabled(multiSelect);
drawnow;
% Java default background colors are different from Matlab's - fix this
%bgcolor = hjFileChooser.Background.getComponents([]);
%set(hFig,'color',bgcolor(1:3));
bgcolor = get(hFig,'color');
hjFileChooser.Background = java.awt.Color(bgcolor(1),bgcolor(2),bgcolor(3));
% Prepare the allowable file types filter (similar to the uigetfile function)
if ~isempty(filterSpec)
if ischar(filterSpec)
origFilterSpec = filterSpec;
[dummy,dummy,ext] = fileparts(filterSpec); %#ok<ASGLU>
filterSpec = {[ext(2:end) ' files'], ['*' ext]};
if ~any(origFilterSpec=='*')
try hjFileChooser.setSelectedFile(java.io.File(origFilterSpec)); catch, end
end
end
hjFileChooser.setAcceptAllFileFilterUsed(false);
fileFilter = {};
%fileFilter{1} = AddFileFilter(hjFileChooser, 'Data files (*.mat)', {'mat'});
%fileFilter{2} = AddFileFilter(hjFileChooser, 'Data or m files (*.m,*.mat)', {'m';'mat'});
%fileFilter{3} = AddFileFilter(hjFileChooser, 'All Files', '*.*');
for filterIdx = 1 : size(filterSpec,1)
fileFilter{end+1} = AddFileFilter(hjFileChooser, filterSpec{filterIdx,:}); %#ok<AGROW>
end
try
hjFileChooser.setFileFilter(fileFilter{1}); % use the first filter by default
catch
% never mind - ignore...
end
end
% Prepare the preview panel
hPreviewPanel = uipanel('parent',hFig, 'title','Preview', 'tag','PreviewPanel', ...
'units','pixel', 'pos',[10,10,480,180], 'Background',bgcolor(1:3));
% Prepare the figure callbacks
hjFileChooser.PropertyChangeCallback = {@PreviewCallback,hPreviewPanel,callback};
hjFileChooser.ActionPerformedCallback = {@ActionPerformedCallback,hFig};
% Key-typed callback
try
hFn = handle(hjFileChooser.getComponent(2).getComponent(2).getComponent(2).getComponent(1),'CallbackProperties');
% hFn should be a javahandle_withcallbacks.com.sun.java.swing.plaf.windows.WindowsFileChooserUI$7
hFn.KeyTypedCallback = {@KeyTypedCallback,hjFileChooser};
catch
% maybe the file-chooser editbox changed location
end
% Wait for user input
uiwait(hFig);
% We get here if the figure is either deleted or Cancel/Open were pressed
if ishghandle(hFig)
% Open were clicked
filename = getappdata(hFig,'selectedFile');
close(hFig);
else % figure was deleted/closed
filename = '';
end
end % uigetfile_with_preview
%% Add a file filter type
function fileFilter = AddFileFilter(hjFileChooser, description, extension)
try
if ~iscell(extension)
extension = {extension};
end
if strcmp(extension{1},'*.*') %any(extension{1} == '*')
jBasicFileChooserUI = javax.swing.plaf.basic.BasicFileChooserUI(hjFileChooser.java);
fileFilter = javaObjectEDT('javax.swing.plaf.basic.BasicFileChooserUI$AcceptAllFileFilter',jBasicFileChooserUI);
else
extension = regexprep(extension,'^.*\*?\.','');
fileFilter = com.mathworks.mwswing.FileExtensionFilter(description, extension, false, true);
end
javaMethodEDT('addChoosableFileFilter',hjFileChooser,fileFilter);
catch
% ignore...
fileFilter = [];
end
end % AddFileFilter
%% Preview callback function
function PreviewCallback(hjFileChooser, eventData, hPreviewPanel, callback) %#ok<INUSL>
try
% Get the selected file
filename = char(hjFileChooser.getSelectedFile);
if isempty(filename) || ~exist(filename,'file')
return; % bail out
end
% Analyze the file based on its type
ClearPanel(hPreviewPanel)
if isempty(callback) % default callback
[fpath,fname,fext] = fileparts(filename); %#ok<ASGLU>
switch fext
% case '.mat'
% % Load the first data element in the file
% data = load(filename);
% fnames = fieldnames(data);
% data = data.(fnames{1});
%
% % Update the preview panel
% hax = axes('Parent',hPreviewPanel, 'units','norm', 'LooseInset',[0,0,0,0]);
% plot(hax, data.x, data.y);
% box(hax, 'off');
case '.tif'
% Load the first data element in the file
data = imread(filename);
if (numel(size(data)))<3
v=data;
v1=zeros([size(v),3]);v1(:,:,1)=v; v1(:,:,2)=v;v1(:,:,3)=v;
data=uint8(v1); v1=[]; v=[];
end
% Update the preview panel
hax = axes('Parent',hPreviewPanel, 'units','norm', 'LooseInset',[0,0,0,0]);
image(data)
%plot(hax, data.x, data.y);
box(hax, 'off');
case '.tiff'
% Load the first data element in the file
data = imread(filename);
if (numel(size(data)))<3
v=data;
v1=zeros([size(v),3]);v1(:,:,1)=v; v1(:,:,2)=v;v1(:,:,3)=v;
data=uint8(v1); v1=[]; v=[];
end
% Update the preview panel
hax = axes('Parent',hPreviewPanel, 'units','norm', 'LooseInset',[0,0,0,0]);
image(data)
%plot(hax, data.x, data.y);
box(hax, 'off');
case '.jpg'
% Load the first data element in the file
data = imread(filename);
if (numel(size(data)))<3
v=data;
v1=zeros([size(v),3]);v1(:,:,1)=v; v1(:,:,2)=v;v1(:,:,3)=v;
data=uint8(v1); v1=[]; v=[];
end
% Update the preview panel
hax = axes('Parent',hPreviewPanel, 'units','norm', 'LooseInset',[0,0,0,0]);
image(data)
%plot(hax, data.x, data.y);
box(hax, 'off');
case '.bmp'
% Load the first data element in the file
data = imread(filename);
if (numel(size(data)))<3
v=data;
v1=zeros([size(v),3]);v1(:,:,1)=v; v1(:,:,2)=v;v1(:,:,3)=v;
data=uint8(v1); v1=[]; v=[];
end
% Update the preview panel
hax = axes('Parent',hPreviewPanel, 'units','norm', 'LooseInset',[0,0,0,0]);
image(data)
%plot(hax, data.x, data.y);
box(hax, 'off');
otherwise
% Do something useful here...
end
else % user-specified callback that accepts hPreviewPanel,filename
callback(hPreviewPanel,filename);
end
catch
% Never mind - bail out...
end
end % PreviewCallback
%% Clear the specified panel
function ClearPanel(hPanel)
try
hObjs = findall(hPanel);
hObjs = setdiff(hObjs, findall(hPanel,'string',get(hPanel,'title'))); % keep the title
%delete(hObjs(2:end));
hObjs = setdiff(hObjs, hPanel); % this is safer...
delete(hObjs);
catch
% ignore...
end
end % ClearPanel
%% Figure actions (Cancel & Open)
function ActionPerformedCallback(hjFileChooser, eventData, hFig)
switch char(eventData.getActionCommand)
case 'CancelSelection'
close(hFig);
case 'ApproveSelection'
files = cellfun(@char, cell(hjFileChooser.getSelectedFiles), 'uniform',0);
%msgbox(['Selected file: ' files{:}], 'Selected!');
if numel(files)==1
%files = files{1};
end
if isempty(files)
files = char(hjFileChooser.getSelectedFile);
end
setappdata(hFig,'selectedFile', files);
uiresume(hFig);
otherwise
% should never happen
end
end % ActionPerformedCallback
%% Key-types callback in the file-name editbox
function KeyTypedCallback(hEditbox, eventData, hjFileChooser) %#ok<INUSL>
text = char(get(hEditbox,'Text'));
[wasFound,idx,unused,folder] = regexp(text,'(.*[:\\/])'); %#ok<ASGLU>
if wasFound
% This will silently fail if folder does not exist
hjFileChooser.setCurrentDirectory(java.io.File(folder));
end
end

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