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fix libaray error by removing big unused header files

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This commit is contained in:
prisar
2023-08-08 00:58:06 +05:30
parent acfbcdbc50
commit cbe19fb62b
4 changed files with 833 additions and 12 deletions
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6
Hemocube_triplate.ino
View File

@@ -1,8 +1,6 @@
#include "ADS1X15.h"
#include <SPI.h>
#include <Wire.h>
#include <Adafruit_GFX.h>
#include <Adafruit_SSD1306.h>
#include <math.h>
const int buttonPin = 12; // Button pin
@@ -15,8 +13,8 @@ char data; //Variable to store the data
ADS1115 ADS(0x48);
int blue_dac = 2220; //390 2940
int green_dac = 1880; //2320 2860
int blue_dac = {led1dac} //2220; //390 2940
int green_dac = {led2dac} //1880; //2320 2860
int green_sample_size = 100;
int blue_sample_size = 100;

2
README.md
View File

@@ -37,6 +37,8 @@ In Sketch.py of everywhereml/arduino replace line 167 and 228 with:
>arduino library not found: manually copy all required libary in the same folder
>Error during build: Platform 'arduino:avr' not found: platform not installed
Try running `arduino-cli core install arduino:avr`
### installation after release

9
flash.py
View File

@@ -19,7 +19,10 @@ C++ header files)
"""
sketch += Ino("""
#include "hello.h"
#include <SPI.h>
#include <Wire.h>
#include <math.h>
#include "ADS1X15.h"
void setup() {
Serial.begin(115200);
@@ -33,7 +36,7 @@ sketch += Ino("""
sketch += H("hello.h", """
void hello() {
Serial.println("hello smi5");
Serial.println("hello smi8");
}
""")
@@ -63,4 +66,4 @@ sketch.upload(port='/dev/cu.usbserial-1420')
# sketch.upload(port='ttyUSB')
# sketch.upload(port='/dev/cu.usbserial-1420') #/dev/cu.usbmodem
print(sketch.output)
print('hi', sketch.output)

828
hemocube.py
View File

@@ -51,24 +51,842 @@ def flash(log_view, led1, led2, port):
C++ header files)
"""
sketch += Ino("""
#include "ADS1X15.h"
#include <SPI.h>
#include <Wire.h>
#include <math.h>
const int buttonPin = 12; // Button pin
const int PIN_CS = 10;
const int GAIN_1 = 0x1;
const int GAIN_2 = 0x0;
const unsigned int steps = 512;
unsigned int sines_of_steps[steps];
char data; //Variable to store the data
ADS1115 ADS(0x48);
int blue_dac = {led1dac}; //2220; //390 2940
int green_dac = {led2dac}; //1880; //2320 2860
int green_sample_size = 100;
int blue_sample_size = 100;
int loopcounter = 0;
unsigned long long intensity_storage = 0;
int temp_counter = 0;
float avg_storage = 0;
float avg_blueS = 0;
float avg_blueS1 = 0;
float avg_blueS2 = 0;
float avg_blueS3 = 0;
float avg_greenS = 0;
float avg_greenS1 = 0;
float avg_greenS2 = 0;
float avg_greenS3 = 0;
float avg_blueB = 0;
float avg_blueB1 = 0;
float avg_blueB2 = 0;
float avg_blueB3 = 0;
float avg_greenB = 0;
float avg_greenB1 = 0;
float avg_greenB2 = 0;
float avg_greenB3 = 0;
float old_blue = 0;
float old_green = 0;
float avg_green = 0;
float avg_blue = 0;
//
bool buttonState = false; // Current button state
bool lastButtonState = false; // Previous button state
//int taskNumber = 1; // Current task number
bool taskStarted = false;
//int buttonPressCount = 0;
int bs;
int split_counter = 0;
int intensity_display = 1;
int plotter = 0;
int blue_stable_time = 50;
int green_stable_time = 50;
int blue_samples = 10;
int green_samples = 10;
int moving_average_array[] = {{0, 0, 0, 0, 0, 0, 0, 0, 0, 0}};
int sorting_array[] = {{0, 0, 0, 0, 0, 0, 0, 0, 0, 0}};
int moving_average = 0;
int j = 0;
int temp_sort = 0;
void setup() {{
// put your setup code here, to run once:
Serial.begin(115200);
Serial.println("SN HCV1001");
pinMode(PIN_CS, OUTPUT);
pinMode(buttonPin, INPUT_PULLUP);
SPI.begin();
SPI.setClockDivider(SPI_CLOCK_DIV2);
ADS.begin();
}}
void setOutput(byte channel, byte gain, byte shutdown, unsigned int val)
{{
byte lowByte = val & 0xff;
byte highByte = ((val >> 8) & 0xff) | channel << 7 | gain << 5 | shutdown << 4;
PORTB &= 0xfb;
SPI.transfer(highByte);
SPI.transfer(lowByte);
PORTB |= 0x4;
}}
void loop() {{
// put your main code here, to run repeatedly:
loopcounter = 0;
avg_storage = 0;
split_counter = 0;
if (Serial.available()) {{
char data = Serial.read();
if (data == 'B') {{
taskStarted = false;
Serial.println("#Place Buffer");
while (!taskStarted) {{
buttonState = digitalRead(buttonPin);
if (buttonState == HIGH && lastButtonState == LOW) {{
lastButtonState = buttonState;
taskStarted = true;
startTask1();
}}
lastButtonState = buttonState;
}}
taskStarted = false;
while (!taskStarted) {{
buttonState = digitalRead(buttonPin);
if (buttonState == HIGH && lastButtonState == LOW) {{
lastButtonState = buttonState;
taskStarted = true;
startTask2();
}}
lastButtonState = buttonState;
}}
}}
else if (data == 'S') {{
Serial.println("Place Sample");
while (digitalRead(buttonPin) == LOW) {{
delay(10);
}}
startTask2();
}}
else if (data == 'P') {{ //Check if the received character is 1
Serial.print("RESULT");
Serial.print(" "); Serial.print("SN HCV1001"); Serial.print(" "); Serial.print(avg_greenB); Serial.print(" "); Serial.print(avg_blueB); Serial.print(" "); Serial.print(avg_greenS); Serial.print(" "); Serial.print(avg_blueS); Serial.print(" ");Serial.print("REND");Serial.println(" ");
delay(100);
}}
}}
}}
void startTask1() {{
Serial.println("#Buffer Started");
setOutput(1, GAIN_1, 1, 0);
setOutput(0, GAIN_1, 1, green_dac);
memset (moving_average_array, 0, 10);
temp_counter = 0;
intensity_storage = 0;
float f = ADS.toVoltage(1); // voltage factor
for (int i = 0; i < green_samples + green_stable_time; i += 1)
{{
int16_t val_0 = ADS.readADC(0);
int16_t val_1 = ADS.readADC(1);
int16_t val_2 = ADS.readADC(2);
int16_t val_3 = ADS.readADC(3);
moving_average_array[i % 10] = val_1;
for (int j = 0; j < 10; j++)
{{
sorting_array[j] = moving_average_array[j];
}}
if (i >= green_stable_time)
{{
for (int j = 0; j < 6; j++)
{{
for (int k = 0; k < (9 - j); k++)
{{
if (sorting_array[k] > sorting_array[k + 1])
{{
temp_sort = sorting_array[k];
sorting_array[k] = sorting_array[k + 1];
sorting_array[k + 1] = temp_sort;
}}
}}
}}
moving_average = (sorting_array[4] / 2) + (sorting_array[5] / 2);
if ((val_1 > (moving_average * 0.9)) and (val_1 < (moving_average * 1.1)))
{{
intensity_storage += val_1;
temp_counter++;
}}
}}
if (intensity_display == 1)
{{
// Serial.print("DAC_value : "); Serial.print(i); Serial.print('\t'); Serial.print('\t'); Serial.print("Green_Resistor_drop: "); Serial.print(val_2);
// Serial.print('\t'); Serial.print('\t'); Serial.print("PD_output: "); Serial.print(val_1); Serial.print('\t'); Serial.print('\t'); Serial.print("PD_2X_output: "); Serial.println(val_0);
}}
if (plotter == 1)
{{
Serial.println(val_1);
}}
//delay(200);
}}
avg_greenB1 = intensity_storage / temp_counter;
delay(500);
setOutput(0, GAIN_1, 1, 0);
setOutput(1, GAIN_1, 1, blue_dac);
memset (moving_average_array, 0, 10);
temp_counter = 0;
intensity_storage = 0;
for (int i = 0; i < blue_samples + blue_stable_time; i += 1)
{{
int16_t val_0 = ADS.readADC(0);
int16_t val_1 = ADS.readADC(1);
int16_t val_2 = ADS.readADC(2);
int16_t val_3 = ADS.readADC(3);
moving_average_array[i % 10] = val_1;
//Serial.println(moving_average_array[0]);
for (int j = 0; j < 10; j++)
{{
sorting_array[j] = moving_average_array[j];
}}
//Serial.println(sorting_array[0]);
if (i >= blue_stable_time)
{{
for (int j = 0; j < 6; j++)
{{
for (int k = 0; k < (9 - j); k++)
{{
if (sorting_array[k] > sorting_array[k + 1])
{{
temp_sort = sorting_array[k];
sorting_array[k] = sorting_array[k + 1];
sorting_array[k + 1] = temp_sort;
}}
}}
}}
moving_average = (sorting_array[4] / 2) + (sorting_array[5] / 2);
if ((val_1 > (moving_average * 0.9)) and (val_1 < (moving_average * 1.1)))
{{
intensity_storage += val_1;
temp_counter++;
}}
}}
if (intensity_display == 1)
{{
// Serial.print("DAC_value : "); Serial.print(i); Serial.print('\t'); Serial.print('\t'); Serial.print("Blue_Resistor_drop: "); Serial.print(val_3);
// Serial.print('\t'); Serial.print('\t'); Serial.print("PD_output: "); Serial.print(val_1); Serial.print('\t'); Serial.print('\t'); Serial.print("PD_2X_output: "); Serial.println(val_0);
}}
if (plotter == 1)
{{
Serial.println(val_1);
}}
//delay(200);
}}
avg_blueB1 = intensity_storage / temp_counter;
setOutput(0, GAIN_1, 1, 0);
setOutput(1, GAIN_1, 1, 0);
delay (100);
setOutput(1, GAIN_1, 1, 0);
setOutput(0, GAIN_1, 1, green_dac);
memset (moving_average_array, 0, 10);
temp_counter = 0;
intensity_storage = 0;
f = ADS.toVoltage(1); // voltage factor
for (int i = 0; i < green_samples + green_stable_time; i += 1)
{{
int16_t val_0 = ADS.readADC(0);
int16_t val_1 = ADS.readADC(1);
int16_t val_2 = ADS.readADC(2);
int16_t val_3 = ADS.readADC(3);
moving_average_array[i % 10] = val_1;
for (int j = 0; j < 10; j++)
{{
sorting_array[j] = moving_average_array[j];
}}
if (i >= green_stable_time)
{{
for (int j = 0; j < 6; j++)
{{
for (int k = 0; k < (9 - j); k++)
{{
if (sorting_array[k] > sorting_array[k + 1])
{{
temp_sort = sorting_array[k];
sorting_array[k] = sorting_array[k + 1];
sorting_array[k + 1] = temp_sort;
}}
}}
}}
moving_average = (sorting_array[4] / 2) + (sorting_array[5] / 2);
if ((val_1 > (moving_average * 0.9)) and (val_1 < (moving_average * 1.1)))
{{
intensity_storage += val_1;
temp_counter++;
}}
}}
if (intensity_display == 1)
{{
// Serial.print("DAC_value : "); Serial.print(i); Serial.print('\t'); Serial.print('\t'); Serial.print("Green_Resistor_drop: "); Serial.print(val_2);
// Serial.print('\t'); Serial.print('\t'); Serial.print("PD_output: "); Serial.print(val_1); Serial.print('\t'); Serial.print('\t'); Serial.print("PD_2X_output: "); Serial.println(val_0);
}}
if (plotter == 1)
{{
Serial.println(val_1);
}}
//delay(200);
}}
avg_greenB2 = intensity_storage / temp_counter;
delay(500);
setOutput(0, GAIN_1, 1, 0);
setOutput(1, GAIN_1, 1, blue_dac);
memset (moving_average_array, 0, 10);
temp_counter = 0;
intensity_storage = 0;
for (int i = 0; i < blue_samples + blue_stable_time; i += 1)
{{
int16_t val_0 = ADS.readADC(0);
int16_t val_1 = ADS.readADC(1);
int16_t val_2 = ADS.readADC(2);
int16_t val_3 = ADS.readADC(3);
moving_average_array[i % 10] = val_1;
//Serial.println(moving_average_array[0]);
for (int j = 0; j < 10; j++)
{{
sorting_array[j] = moving_average_array[j];
}}
//Serial.println(sorting_array[0]);
if (i >= blue_stable_time)
{{
for (int j = 0; j < 6; j++)
{{
for (int k = 0; k < (9 - j); k++)
{{
if (sorting_array[k] > sorting_array[k + 1])
{{
temp_sort = sorting_array[k];
sorting_array[k] = sorting_array[k + 1];
sorting_array[k + 1] = temp_sort;
}}
}}
}}
moving_average = (sorting_array[4] / 2) + (sorting_array[5] / 2);
if ((val_1 > (moving_average * 0.9)) and (val_1 < (moving_average * 1.1)))
{{
intensity_storage += val_1;
temp_counter++;
}}
}}
if (intensity_display == 1)
{{
// Serial.print("DAC_value : "); Serial.print(i); Serial.print('\t'); Serial.print('\t'); Serial.print("Blue_Resistor_drop: "); Serial.print(val_3);
// Serial.print('\t'); Serial.print('\t'); Serial.print("PD_output: "); Serial.print(val_1); Serial.print('\t'); Serial.print('\t'); Serial.print("PD_2X_output: "); Serial.println(val_0);
}}
if (plotter == 1)
{{
Serial.println(val_1);
}}
//delay(200);
}}
avg_blueB2 = intensity_storage / temp_counter;
setOutput(0, GAIN_1, 1, 0);
setOutput(1, GAIN_1, 1, 0);
delay (100);
setOutput(1, GAIN_1, 1, 0);
setOutput(0, GAIN_1, 1, green_dac);
memset (moving_average_array, 0, 10);
temp_counter = 0;
intensity_storage = 0;
f = ADS.toVoltage(1); // voltage factor
for (int i = 0; i < green_samples + green_stable_time; i += 1)
{{
int16_t val_0 = ADS.readADC(0);
int16_t val_1 = ADS.readADC(1);
int16_t val_2 = ADS.readADC(2);
int16_t val_3 = ADS.readADC(3);
moving_average_array[i % 10] = val_1;
for (int j = 0; j < 10; j++)
{{
sorting_array[j] = moving_average_array[j];
}}
if (i >= green_stable_time)
{{
for (int j = 0; j < 6; j++)
{{
for (int k = 0; k < (9 - j); k++)
{{
if (sorting_array[k] > sorting_array[k + 1])
{{
temp_sort = sorting_array[k];
sorting_array[k] = sorting_array[k + 1];
sorting_array[k + 1] = temp_sort;
}}
}}
}}
moving_average = (sorting_array[4] / 2) + (sorting_array[5] / 2);
if ((val_1 > (moving_average * 0.9)) and (val_1 < (moving_average * 1.1)))
{{
intensity_storage += val_1;
temp_counter++;
}}
}}
if (intensity_display == 1)
{{
// Serial.print("DAC_value : "); Serial.print(i); Serial.print('\t'); Serial.print('\t'); Serial.print("Green_Resistor_drop: "); Serial.print(val_2);
// Serial.print('\t'); Serial.print('\t'); Serial.print("PD_output: "); Serial.print(val_1); Serial.print('\t'); Serial.print('\t'); Serial.print("PD_2X_output: "); Serial.println(val_0);
}}
if (plotter == 1)
{{
Serial.println(val_1);
}}
//delay(200);
}}
avg_greenB3 = intensity_storage / temp_counter;
delay(500);
setOutput(0, GAIN_1, 1, 0);
setOutput(1, GAIN_1, 1, blue_dac);
memset (moving_average_array, 0, 10);
temp_counter = 0;
intensity_storage = 0;
for (int i = 0; i < blue_samples + blue_stable_time; i += 1)
{{
int16_t val_0 = ADS.readADC(0);
int16_t val_1 = ADS.readADC(1);
int16_t val_2 = ADS.readADC(2);
int16_t val_3 = ADS.readADC(3);
moving_average_array[i % 10] = val_1;
//Serial.println(moving_average_array[0]);
for (int j = 0; j < 10; j++)
{{
sorting_array[j] = moving_average_array[j];
}}
//Serial.println(sorting_array[0]);
if (i >= blue_stable_time)
{{
for (int j = 0; j < 6; j++)
{{
for (int k = 0; k < (9 - j); k++)
{{
if (sorting_array[k] > sorting_array[k + 1])
{{
temp_sort = sorting_array[k];
sorting_array[k] = sorting_array[k + 1];
sorting_array[k + 1] = temp_sort;
}}
}}
}}
moving_average = (sorting_array[4] / 2) + (sorting_array[5] / 2);
if ((val_1 > (moving_average * 0.9)) and (val_1 < (moving_average * 1.1)))
{{
intensity_storage += val_1;
temp_counter++;
}}
}}
if (intensity_display == 1)
{{
// Serial.print("DAC_value : "); Serial.print(i); Serial.print('\t'); Serial.print('\t'); Serial.print("Blue_Resistor_drop: "); Serial.print(val_3);
// Serial.print('\t'); Serial.print('\t'); Serial.print("PD_output: "); Serial.print(val_1); Serial.print('\t'); Serial.print('\t'); Serial.print("PD_2X_output: "); Serial.println(val_0);
}}
if (plotter == 1)
{{
Serial.println(val_1);
}}
//delay(200);
}}
avg_blueB3 = intensity_storage / temp_counter;
delay(100);
setOutput(0, GAIN_1, 1, 0);
setOutput(1, GAIN_1, 1, 0);
avg_blueB = (avg_blueB1 + avg_blueB2 + avg_blueB3) / 3;
avg_greenB = (avg_greenB1 + avg_greenB2 + avg_greenB3) / 3;
Serial.print("ok Green B Intensity: "); Serial.println(avg_greenB);
Serial.print("ok Blue B Intensity: "); Serial.println(avg_blueB);
Serial.println("#Buffer Completed");
Serial.println("#Place sample");
delay(200);
}}
void startTask2() {{
Serial.println("#Sample started");
setOutput(1, GAIN_1, 1, 0);
setOutput(0, GAIN_1, 1, green_dac);
memset (moving_average_array, 0, 10);
temp_counter = 0;
intensity_storage = 0;
float f = ADS.toVoltage(1); // voltage factor
for (int i = 0; i < green_samples + green_stable_time; i += 1)
{{
int16_t val_0 = ADS.readADC(0);
int16_t val_1 = ADS.readADC(1);
int16_t val_2 = ADS.readADC(2);
int16_t val_3 = ADS.readADC(3);
moving_average_array[i % 10] = val_1;
for (int j = 0; j < 10; j++)
{{
sorting_array[j] = moving_average_array[j];
}}
if (i >= green_stable_time)
{{
for (int j = 0; j < 6; j++)
{{
for (int k = 0; k < (9 - j); k++)
{{
if (sorting_array[k] > sorting_array[k + 1])
{{
temp_sort = sorting_array[k];
sorting_array[k] = sorting_array[k + 1];
sorting_array[k + 1] = temp_sort;
}}
}}
}}
moving_average = (sorting_array[4] / 2) + (sorting_array[5] / 2);
if ((val_1 > (moving_average * 0.9)) and (val_1 < (moving_average * 1.1)))
{{
intensity_storage += val_1;
temp_counter++;
}}
}}
if (intensity_display == 1)
{{
// Serial.print("DAC_value : "); Serial.print(i); Serial.print('\t'); Serial.print('\t'); Serial.print("Green_Resistor_drop: "); Serial.print(val_2);
// Serial.print('\t'); Serial.print('\t'); Serial.print("PD_output: "); Serial.print(val_1); Serial.print('\t'); Serial.print('\t'); Serial.print("PD_2X_output: "); Serial.println(val_0);
}}
if (plotter == 1)
{{
Serial.println(val_1);
}}
//delay(200);
}}
avg_greenS1 = intensity_storage / temp_counter;
delay(500);
setOutput(0, GAIN_1, 1, 0);
setOutput(1, GAIN_1, 1, blue_dac);
memset (moving_average_array, 0, 10);
temp_counter = 0;
intensity_storage = 0;
for (int i = 0; i < blue_samples + blue_stable_time; i += 1)
{{
int16_t val_0 = ADS.readADC(0);
int16_t val_1 = ADS.readADC(1);
int16_t val_2 = ADS.readADC(2);
int16_t val_3 = ADS.readADC(3);
moving_average_array[i % 10] = val_1;
//Serial.println(moving_average_array[0]);
for (int j = 0; j < 10; j++)
{{
sorting_array[j] = moving_average_array[j];
}}
//Serial.println(sorting_array[0]);
if (i >= blue_stable_time)
{{
for (int j = 0; j < 6; j++)
{{
for (int k = 0; k < (9 - j); k++)
{{
if (sorting_array[k] > sorting_array[k + 1])
{{
temp_sort = sorting_array[k];
sorting_array[k] = sorting_array[k + 1];
sorting_array[k + 1] = temp_sort;
}}
}}
}}
moving_average = (sorting_array[4] / 2) + (sorting_array[5] / 2);
if ((val_1 > (moving_average * 0.9)) and (val_1 < (moving_average * 1.1)))
{{
intensity_storage += val_1;
temp_counter++;
}}
}}
if (intensity_display == 1)
{{
// Serial.print("DAC_value : "); Serial.print(i); Serial.print('\t'); Serial.print('\t'); Serial.print("Blue_Resistor_drop: "); Serial.print(val_3);
// Serial.print('\t'); Serial.print('\t'); Serial.print("PD_output: "); Serial.print(val_1); Serial.print('\t'); Serial.print('\t'); Serial.print("PD_2X_output: "); Serial.println(val_0);
}}
if (plotter == 1)
{{
Serial.println(val_1);
}}
//delay(200);
}}
avg_blueS1 = intensity_storage / temp_counter;
setOutput(0, GAIN_1, 1, 0);
setOutput(1, GAIN_1, 1, 0);
delay(100);
setOutput(1, GAIN_1, 1, 0);
setOutput(0, GAIN_1, 1, green_dac);
memset (moving_average_array, 0, 10);
temp_counter = 0;
intensity_storage = 0;
f = ADS.toVoltage(1); // voltage factor
for (int i = 0; i < green_samples + green_stable_time; i += 1)
{{
int16_t val_0 = ADS.readADC(0);
int16_t val_1 = ADS.readADC(1);
int16_t val_2 = ADS.readADC(2);
int16_t val_3 = ADS.readADC(3);
moving_average_array[i % 10] = val_1;
for (int j = 0; j < 10; j++)
{{
sorting_array[j] = moving_average_array[j];
}}
if (i >= green_stable_time)
{{
for (int j = 0; j < 6; j++)
{{
for (int k = 0; k < (9 - j); k++)
{{
if (sorting_array[k] > sorting_array[k + 1])
{{
temp_sort = sorting_array[k];
sorting_array[k] = sorting_array[k + 1];
sorting_array[k + 1] = temp_sort;
}}
}}
}}
moving_average = (sorting_array[4] / 2) + (sorting_array[5] / 2);
if ((val_1 > (moving_average * 0.9)) and (val_1 < (moving_average * 1.1)))
{{
intensity_storage += val_1;
temp_counter++;
}}
}}
if (intensity_display == 1)
{{
// Serial.print("DAC_value : "); Serial.print(i); Serial.print('\t'); Serial.print('\t'); Serial.print("Green_Resistor_drop: "); Serial.print(val_2);
// Serial.print('\t'); Serial.print('\t'); Serial.print("PD_output: "); Serial.print(val_1); Serial.print('\t'); Serial.print('\t'); Serial.print("PD_2X_output: "); Serial.println(val_0);
}}
if (plotter == 1)
{{
Serial.println(val_1);
}}
//delay(200);
}}
avg_greenS2 = intensity_storage / temp_counter;
delay(500);
setOutput(0, GAIN_1, 1, 0);
setOutput(1, GAIN_1, 1, blue_dac);
memset (moving_average_array, 0, 10);
temp_counter = 0;
intensity_storage = 0;
for (int i = 0; i < blue_samples + blue_stable_time; i += 1)
{{
int16_t val_0 = ADS.readADC(0);
int16_t val_1 = ADS.readADC(1);
int16_t val_2 = ADS.readADC(2);
int16_t val_3 = ADS.readADC(3);
moving_average_array[i % 10] = val_1;
//Serial.println(moving_average_array[0]);
for (int j = 0; j < 10; j++)
{{
sorting_array[j] = moving_average_array[j];
}}
//Serial.println(sorting_array[0]);
if (i >= blue_stable_time)
{{
for (int j = 0; j < 6; j++)
{{
for (int k = 0; k < (9 - j); k++)
{{
if (sorting_array[k] > sorting_array[k + 1])
{{
temp_sort = sorting_array[k];
sorting_array[k] = sorting_array[k + 1];
sorting_array[k + 1] = temp_sort;
}}
}}
}}
moving_average = (sorting_array[4] / 2) + (sorting_array[5] / 2);
if ((val_1 > (moving_average * 0.9)) and (val_1 < (moving_average * 1.1)))
{{
intensity_storage += val_1;
temp_counter++;
}}
}}
if (intensity_display == 1)
{{
// Serial.print("DAC_value : "); Serial.print(i); Serial.print('\t'); Serial.print('\t'); Serial.print("Blue_Resistor_drop: "); Serial.print(val_3);
// Serial.print('\t'); Serial.print('\t'); Serial.print("PD_output: "); Serial.print(val_1); Serial.print('\t'); Serial.print('\t'); Serial.print("PD_2X_output: "); Serial.println(val_0);
}}
if (plotter == 1)
{{
Serial.println(val_1);
}}
//delay(200);
}}
avg_blueS2 = intensity_storage / temp_counter;
setOutput(0, GAIN_1, 1, 0);
setOutput(1, GAIN_1, 1, 0);
delay(100);
setOutput(1, GAIN_1, 1, 0);
setOutput(0, GAIN_1, 1, green_dac);
memset (moving_average_array, 0, 10);
temp_counter = 0;
intensity_storage = 0;
f = ADS.toVoltage(1); // voltage factor
for (int i = 0; i < green_samples + green_stable_time; i += 1)
{{
int16_t val_0 = ADS.readADC(0);
int16_t val_1 = ADS.readADC(1);
int16_t val_2 = ADS.readADC(2);
int16_t val_3 = ADS.readADC(3);
moving_average_array[i % 10] = val_1;
for (int j = 0; j < 10; j++)
{{
sorting_array[j] = moving_average_array[j];
}}
if (i >= green_stable_time)
{{
for (int j = 0; j < 6; j++)
{{
for (int k = 0; k < (9 - j); k++)
{{
if (sorting_array[k] > sorting_array[k + 1])
{{
temp_sort = sorting_array[k];
sorting_array[k] = sorting_array[k + 1];
sorting_array[k + 1] = temp_sort;
}}
}}
}}
moving_average = (sorting_array[4] / 2) + (sorting_array[5] / 2);
if ((val_1 > (moving_average * 0.9)) and (val_1 < (moving_average * 1.1)))
{{
intensity_storage += val_1;
temp_counter++;
}}
}}
if (intensity_display == 1)
{{
// Serial.print("DAC_value : "); Serial.print(i); Serial.print('\t'); Serial.print('\t'); Serial.print("Green_Resistor_drop: "); Serial.print(val_2);
// Serial.print('\t'); Serial.print('\t'); Serial.print("PD_output: "); Serial.print(val_1); Serial.print('\t'); Serial.print('\t'); Serial.print("PD_2X_output: "); Serial.println(val_0);
}}
if (plotter == 1)
{{
Serial.println(val_1);
}}
//delay(200);
}}
avg_greenS3 = intensity_storage / temp_counter;
delay(500);
setOutput(0, GAIN_1, 1, 0);
setOutput(1, GAIN_1, 1, blue_dac);
memset (moving_average_array, 0, 10);
temp_counter = 0;
intensity_storage = 0;
for (int i = 0; i < blue_samples + blue_stable_time; i += 1)
{{
int16_t val_0 = ADS.readADC(0);
int16_t val_1 = ADS.readADC(1);
int16_t val_2 = ADS.readADC(2);
int16_t val_3 = ADS.readADC(3);
moving_average_array[i % 10] = val_1;
//Serial.println(moving_average_array[0]);
for (int j = 0; j < 10; j++)
{{
sorting_array[j] = moving_average_array[j];
}}
//Serial.println(sorting_array[0]);
if (i >= blue_stable_time)
{{
for (int j = 0; j < 6; j++)
{{
for (int k = 0; k < (9 - j); k++)
{{
if (sorting_array[k] > sorting_array[k + 1])
{{
temp_sort = sorting_array[k];
sorting_array[k] = sorting_array[k + 1];
sorting_array[k + 1] = temp_sort;
}}
}}
}}
moving_average = (sorting_array[4] / 2) + (sorting_array[5] / 2);
if ((val_1 > (moving_average * 0.9)) and (val_1 < (moving_average * 1.1)))
{{
intensity_storage += val_1;
temp_counter++;
}}
}}
if (intensity_display == 1)
{{
// Serial.print("DAC_value : "); Serial.print(i); Serial.print('\t'); Serial.print('\t'); Serial.print("Blue_Resistor_drop: "); Serial.print(val_3);
// Serial.print('\t'); Serial.print('\t'); Serial.print("PD_output: "); Serial.print(val_1); Serial.print('\t'); Serial.print('\t'); Serial.print("PD_2X_output: "); Serial.println(val_0);
}}
if (plotter == 1)
{{
Serial.println(val_1);
}}
//delay(200);
}}
avg_blueS3 = intensity_storage / temp_counter;
setOutput(0, GAIN_1, 1, 0);
setOutput(1, GAIN_1, 1, 0);
avg_greenS = (avg_greenS1 + avg_greenS2 + avg_greenS3) / 3;
avg_blueS = (avg_blueS1 + avg_blueS2 + avg_blueS3) / 3;
Serial.print("ok Green Intensity: "); Serial.println(avg_greenS);
Serial.print("ok Blue Intensity: "); Serial.println(avg_blueS);
Serial.println("#Sample Completed");
delay(300);
}}
""".format(led1dac=led1, led2dac=led2))
sketch += H("hello.h", """
void hello() {
Serial.println("HemoCube QC");
Serial.println("HemoCube QC 1");
}
""")
@@ -100,7 +918,7 @@ void loop() {{
# sketch.upload(port='ttyUSB')
# sketch.upload(port='/dev/cu.usbserial-1420') #/dev/cu.usbmodem
log_view.add_log("upload: \n\n" + sketch.output)
log_view.add_log("uploading... \n\n" + sketch.output)
print(sketch.output)
def showdialog():