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updated preprod changes added

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This commit is contained in:
Mariya
2023-11-21 14:15:55 +05:30
parent e92a80caec
commit f26f3098bb
2 changed files with 180 additions and 43 deletions
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36
app/src/main/java/com/example/hpostesting/data/constant/Constants.kt
View File

@@ -74,4 +74,40 @@ object Constants {
const val BUFFER_VALUE_3 = "BufferValue3"
const val BUFFER_VALUE_4 = "BufferValue4"
const val DEVICE_ID = "DEVICE_ID"
const val BUFFER_LED_LOWER_BOUND = 21000
const val BUFFER_LED_UPPER_BOUND = 24500
val DEVICE_CONFIGURATION: Map<String, List<List<Double>>> = mapOf<String, List<List<Double>>>(
"HCV-000-3001" to listOf(
listOf(1.264817, -0.85965), // LED1, 435nm
listOf(0.581462456, -0.58502), // LED2, 415nm
listOf(0.184991, 0.001704), // LED3, 555nm
listOf(1.0, 0.0) // LED4
),
"HCV-000-3002" to listOf(
listOf(1.264817, -0.85965),
listOf(0.581462456, -0.58502),
listOf(0.184991, 0.001704),
listOf(1.0, 0.0)
),
)
const val INCUBATION_TIME_MIN = 15
const val INCUBATION_TIME_MAX = 30
val BUFFER_INTENSITY_THRESHOLDS: Map<String, List<List<Int>>> = mapOf<String, List<List<Int>>>(
"HCV-000-3001" to listOf(
listOf(24000, 24500),
listOf(21000, 24500),
listOf(21000, 24500),
listOf(21000, 24500),
),
"HCV-000-3002" to listOf(
listOf(21000, 24500),
listOf(21000, 24500),
listOf(21000, 24500),
listOf(21000, 24500),
)
)
}

187
app/src/main/java/com/example/hpostesting/presentation/hemocube/HemoCubeFragment.kt
View File

@@ -5,7 +5,6 @@ import android.content.Intent
import android.content.SharedPreferences
import android.graphics.Color
import android.os.Bundle
import android.util.Log
import android.view.LayoutInflater
import android.view.View
import android.view.ViewGroup
@@ -20,7 +19,6 @@ import com.example.hpostesting.data.model.patient.DeviceData
import com.example.hpostesting.data.model.patient.toHemoCubeTestData
import com.example.hpostesting.presentation.UsbServiceListener
import com.example.hpostesting.presentation.dashboard.DashboardActivity
import com.example.hpostesting.presentation.diagnostics.DiagnosticsActivity
import com.example.hpostesting.presentation.utils.MyDialogListener
import com.example.hpostesting.presentation.utils.UIUtils
import com.google.firebase.crashlytics.ktx.crashlytics
@@ -35,7 +33,7 @@ class HemoCubeFragment : Fragment() {
private lateinit var binding: FragmentHemoCubeReferenceBinding
private val hemoCubeViewModel: HemoCubeViewModel by activityViewModels()
private lateinit var sharedPreferences: SharedPreferences
val testDetails = DataHolder.selectedTest?.toHemoCubeTestData()
private val testDetails = DataHolder.selectedTest?.toHemoCubeTestData()
private var isOnline = false
private var currentDeviceData: DeviceData? = null
private var resultData: String = ""
@@ -45,12 +43,19 @@ class HemoCubeFragment : Fragment() {
private val testingTrace = Firebase.performance.newTrace("testing_trace")
private var led1BufferForDevice = 0.0
private var led2BufferForDevice = 0.0
private var led3BufferForDevice = 0.0
private var led3BufferForDevice = 0.0
private var led4BufferForDevice = 0.0
private var led1SampleForDevice = 0.0
private var led2SampleForDevice = 0.0
private var led3SampleForDevice = 0.0
private var led3SampleForDevice = 0.0
private var led4SampleForDevice = 0.0
private var fittedAbs1 = 0.0
private var fittedAbs2 = 0.0
private var fittedAbs3 = 0.0
private var fittedAbs4 = 0.0
private var _predictedDenovixRatio = 0.0
private var validationError = false
private var deviceHardwareId = ""
override fun onCreateView(
inflater: LayoutInflater, container: ViewGroup?, savedInstanceState: Bundle?,
@@ -84,8 +89,8 @@ class HemoCubeFragment : Fragment() {
binding.nameEditText.visibility = View.GONE
binding.tvTitle.visibility = View.GONE
binding.btnGo.visibility = View.GONE
binding.btnSubmit.isEnabled = true
binding.btnSubmit.isClickable = true
binding.btnSubmit.isEnabled = false
binding.btnSubmit.isClickable = false
binding.btnPlacebuffer.visibility = View.GONE
binding.tvName.text = "Name: ${testDetails?.name}\n ID: ${testDetails?._id}"
@@ -94,10 +99,10 @@ class HemoCubeFragment : Fragment() {
binding.btnSamplestart.setOnClickListener {
activity?.runOnUiThread {
binding.tvSubtitle4.visibility = View.VISIBLE
binding.tvSubtitle4.text = "Sample Started"
// binding.tvSubtitle4.text = "Sample Started"
}
startSampleProcess()
it.visibility = View.GONE
startSampleProcess()
it.visibility = View.GONE
}
binding.btnPlacebuffer.setOnClickListener {
@@ -106,10 +111,13 @@ class HemoCubeFragment : Fragment() {
} else {
activity?.runOnUiThread {
binding.tvSubtitle4.visibility = View.VISIBLE
// binding.tvSubtitle4.text = "Buffer Started"
}
checkAndStartProcess()
it.visibility = View.GONE
}
it.visibility = View.GONE
}
}
@@ -118,18 +126,11 @@ class HemoCubeFragment : Fragment() {
hemoCubeViewModel.fireBaseUpload.observe(viewLifecycleOwner) { result ->
if (result == "Success") {
showToast("Test Results Uploaded Successfully")
val digitalCardFragment = DigitalCardFragment()
val transaction = parentFragmentManager.beginTransaction()
transaction.replace(R.id.fragment_container, digitalCardFragment)
transaction.addToBackStack(null)
transaction.commit()
// val i = Intent(
// requireContext().applicationContext, DashboardActivity::class.java
// )
// startActivity(i)
// (activity as HemocubeActivity).finish()
val i = Intent(
requireContext().applicationContext, DashboardActivity::class.java
)
startActivity(i)
(activity as HemocubeActivity).finish()
}
if (result == "Local") {
showToast("Internet not available, test details stored locally")
@@ -290,6 +291,7 @@ class HemoCubeFragment : Fragment() {
val slData = stringData.split(" ")
if (slData.size > 1) {
val hardwareId = slData[1].trim()
deviceHardwareId = hardwareId
with(sharedPreferences.edit()) {
putString(Constants.DEVICE_ID, hardwareId)
apply()
@@ -320,12 +322,16 @@ class HemoCubeFragment : Fragment() {
}
stringData.contains("#SC") -> {
binding.tvSubtitle4.text = "Sample Completed"
hemoCubeViewModel.messages.postValue("Sample Completed \nGathering data")
fetchResult()
testingTrace.stop()
}
resultData.contains("REND") -> {
hemoCubeViewModel.messages.postValue(
"Data collected \n" +
" Processing data"
)
val resultLines = resultData.split("\\s+(?=LB|LS)".toRegex())
var bufferIntensity = resultLines[1].split(' ')[1].trim()
led1BufferForDevice = if (isUsingExistingBuffer) {
@@ -359,7 +365,8 @@ class HemoCubeFragment : Fragment() {
sampleIntensity = resultLines[7].split(' ')[1].trim()
led3SampleForDevice = resultLines[7].split(' ')[1].trim().toDoubleOrNull()!!
sampleIntensity = resultLines[8].split(' ')[1].split('\r')[0].trim()
led4SampleForDevice = resultLines[8].split(' ')[1].split('\r')[0].trim().toDoubleOrNull()!!
led4SampleForDevice =
resultLines[8].split(' ')[1].split('\r')[0].trim().toDoubleOrNull()!!
processResult()
}
}
@@ -396,6 +403,7 @@ class HemoCubeFragment : Fragment() {
private fun processResult() {
try {
hemoCubeViewModel.messages.postValue("processing result")
val deviceLog = resultData
val pInfo = requireActivity().packageManager.getPackageInfo(
@@ -407,11 +415,63 @@ class HemoCubeFragment : Fragment() {
val led2Average = log10(led2BufferForDevice?.div(led2SampleForDevice!!) ?: 0.0)
val led3Average = log10(led3BufferForDevice?.div(led3SampleForDevice!!) ?: 0.0)
val led4Average = log10(led4BufferForDevice?.div(led4SampleForDevice!!) ?: 0.0)
val deviceRatio = led1Average / led3Average
val deviceRatio = led3Average / led1Average
if (led1Average < 0 || led2Average < 0) {
if (led1BufferForDevice < Constants.BUFFER_INTENSITY_THRESHOLDS[deviceHardwareId]?.get(0)?.get(0)!!
|| led2BufferForDevice < Constants.BUFFER_INTENSITY_THRESHOLDS[deviceHardwareId]?.get(1)?.get(0)!!
|| led3BufferForDevice < Constants.BUFFER_INTENSITY_THRESHOLDS[deviceHardwareId]?.get(2)?.get(0)!!
|| led4BufferForDevice < Constants.BUFFER_INTENSITY_THRESHOLDS[deviceHardwareId]?.get(3)?.get(0)!!
) {
validationError = true
activity?.runOnUiThread {
binding.errorMessage.text = "Warning: Negative Abs. Retake Blank Reading"
binding.errorMessage.text = "Error: Invalid Test. Improper buffer reading (low)"
binding.errorMessage.visibility = View.VISIBLE
}
}
if (led1BufferForDevice > Constants.BUFFER_INTENSITY_THRESHOLDS[deviceHardwareId]?.get(0)?.get(1)!!
|| led2BufferForDevice > Constants.BUFFER_INTENSITY_THRESHOLDS[deviceHardwareId]?.get(1)?.get(1)!!
|| led3BufferForDevice > Constants.BUFFER_INTENSITY_THRESHOLDS[deviceHardwareId]?.get(2)?.get(1)!!
|| led4BufferForDevice > Constants.BUFFER_INTENSITY_THRESHOLDS[deviceHardwareId]?.get(3)?.get(1)!!
) {
validationError = true
activity?.runOnUiThread {
binding.errorMessage.text =
"Error: Invalid Test. Improper buffer reading (high)"
binding.errorMessage.visibility = View.VISIBLE
}
}
var gradient = Constants.DEVICE_CONFIGURATION[deviceHardwareId]?.get(0)?.get(0)
var constant = Constants.DEVICE_CONFIGURATION[deviceHardwareId]?.get(0)?.get(1)
fittedAbs1 = gradient?.times(led1Average)?.plus(constant!!)!!
gradient = Constants.DEVICE_CONFIGURATION[deviceHardwareId]?.get(1)?.get(0)
constant = Constants.DEVICE_CONFIGURATION[deviceHardwareId]?.get(1)?.get(1)
fittedAbs2 = gradient?.times(led2Average)?.plus(constant!!)!!
gradient = Constants.DEVICE_CONFIGURATION[deviceHardwareId]?.get(2)?.get(0)
constant = Constants.DEVICE_CONFIGURATION[deviceHardwareId]?.get(2)?.get(1)
fittedAbs3 = gradient?.times(led3Average)?.plus(constant!!)!!
gradient = Constants.DEVICE_CONFIGURATION[deviceHardwareId]?.get(3)?.get(0)
constant = Constants.DEVICE_CONFIGURATION[deviceHardwareId]?.get(3)?.get(1)
fittedAbs4 = gradient?.times(led4Average)?.plus(constant!!)!!
_predictedDenovixRatio = fittedAbs3?.div(fittedAbs1!!)!!
if (fittedAbs1!! <= fittedAbs2!!) {
validationError = true
activity?.runOnUiThread {
binding.errorMessage.text = "Error: Invalid Test. Problem with de-oxygenation"
binding.errorMessage.visibility = View.VISIBLE
}
}
if (fittedAbs1 < 0 || fittedAbs2 < 0 || fittedAbs3 < 0 || fittedAbs4 < 0) {
validationError = true
activity?.runOnUiThread {
binding.errorMessage.text = "Error: Negative Abs. Retake Blank Reading"
binding.errorMessage.visibility = View.VISIBLE
}
}
@@ -431,28 +491,43 @@ class HemoCubeFragment : Fragment() {
this.led2Average = led2Average
this.led3Average = led3Average
this.led4Average = led4Average
this.abs1 = fittedAbs1
this.abs2 = fittedAbs2
this.abs3 = fittedAbs3
this.abs4 = fittedAbs4
this.deviceRatio = deviceRatio
this.calculatedRatio = calculateRatio(deviceRatio)
this.predictedDenovixRatio = _predictedDenovixRatio
this.coefficients = currentDeviceData?.coefficients?.get(0)
.toString() + ", " + currentDeviceData?.coefficients?.get(1).toString()
this.classificationResult = findResult(calculatedRatio)
hemoCubeViewModel.messages.postValue(this.classificationResult)
this.prdClassification = absorbanceBasedClassification(predictedDenovixRatio)
hemoCubeViewModel.messages.postValue(this.prdClassification)
this.resultData = deviceLog
if (!isUsingExistingBuffer) {
with(sharedPreferences.edit()) {
putString(Constants.BUFFER_VALUE_1, led1BufferForDevice.toString())
putString(Constants.BUFFER_VALUE_2, led2BufferForDevice.toString())
putString(Constants.BUFFER_VALUE_3, led3BufferForDevice.toString())
putString(Constants.BUFFER_VALUE_4, led4BufferForDevice.toString())
apply()
}
this.batteryLevel = hemoCubeViewModel.getBatteryLevel().toString()
this.batteryCapacity = hemoCubeViewModel.getBatteryCapacity(requireContext()).toString()
this.batteryMaxCapacity = hemoCubeViewModel.getBatteryMaxCapacity(requireContext()).toString()
this.batteryTemperature = hemoCubeViewModel.getBatteryTemperature().toString()
this.batteryVoltage = hemoCubeViewModel.getBatteryVoltage(requireContext()).toString()
}
if (!isUsingExistingBuffer) {
with(sharedPreferences.edit()) {
putString(Constants.BUFFER_VALUE_1, led1BufferForDevice.toString())
putString(Constants.BUFFER_VALUE_2, led2BufferForDevice.toString())
putString(Constants.BUFFER_VALUE_3, led3BufferForDevice.toString())
putString(Constants.BUFFER_VALUE_4, led4BufferForDevice.toString())
apply()
}
activity?.runOnUiThread {
binding.btnSubmit.visibility = View.VISIBLE
}
}
if (!validationError) {
activity?.runOnUiThread {
binding.btnSubmit.visibility = View.VISIBLE
binding.btnSubmit.isEnabled = true
binding.btnSubmit.isClickable = true
binding.clParent.setBackgroundColor(Color.parseColor("#edfffd"))
}
}
} catch (e: Exception) {
Toast.makeText(
@@ -464,8 +539,9 @@ class HemoCubeFragment : Fragment() {
}
}
private fun findResult(calculatedRatio: Double?): String {
fun findResult(calculatedRatio: Double?): String {
try {
hemoCubeViewModel.messages.postValue("result classification")
if (calculatedRatio != null) {
if (calculatedRatio < 0.05)
return "Inconclusive. Very low Absorbance - Repeat test with Higher Blood Volume"
@@ -482,14 +558,39 @@ class HemoCubeFragment : Fragment() {
if (calculatedRatio > 0.35)
return "Inconclusive. Repeat with test with lower volume of blood"
} else {
return "NULL"
return "INVALID"
}
} catch (e: Exception) {
showToast("error while performing classification")
Firebase.crashlytics.recordException(e)
return "ERROR"
}
return "NULL"
return "INVALID"
}
private fun absorbanceBasedClassification(predictedDenovixRatio: Double?): String {
try {
hemoCubeViewModel.messages.postValue("result classification")
if (predictedDenovixRatio != null) {
if (predictedDenovixRatio in 0.0..0.16)
return "Normal"
if (predictedDenovixRatio in 0.16..0.165)
return "Negative Borderline"
if (predictedDenovixRatio in 0.165..0.235)
return "Sickle Cell Trait"
if (predictedDenovixRatio in 0.235..0.24)
return "Positive Borderline"
if (predictedDenovixRatio in 0.24..1.0)
return "Sickle Cell Disease"
} else {
return "INVALID"
}
} catch (e: Exception) {
showToast("error while performing classification")
Firebase.crashlytics.recordException(e)
return "ERROR"
}
return "INVALID"
}
private fun showToast(message: String) {